Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03058 ATGATGAGTGCAACTGCAACTGCCAGAAATAGGTCTCCTTTCACACCATCTCAGTGGCAAGAGCTTGAGCAACAAGCTCTTGTTTTCAAATACATGGTCACAGGAACACCTATCCCACCAGATCTCATCTACTCGATTAAAAGAAGTCTAGACTCTTCAATTTCTTCGAGACTCTTTCCACATCATCCAATTGGGTGGGGATGTTTTGAAATGGGATTTGGCAGAAAAGTAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGCAAGAAATGGAGATGCTCAAAGGAAGCATATCCAGACTCAAAGTACTGTGAAAGACACATGCACAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAGTTTCTTCAGCAACAAGCACCGCCACTAACACCTCCCAAACAATCCCATCTTATACCAGAAACCTTTCCTTGGCAAACCCCACCATAACTTCACCCTCTTTCCCTTTCTCTCCTTTGCCCTCTTCTATGCCCTGTGACTCCCAACACTTTTCCCAATCCTACCAAAACCCTTCTCTCAATCCCTTTTTCTATGCCCAATCAACCTCCTCTAGACCCCCAGATTCTGATTTTTCACCCCAAGATGCCACTACCCACCAGCTATTCATGGACTCTGCTTCTTATTCTCATGATGAGAAGGATTACAGGCATGTTCATGGAATAAGGGAAGATGTGGATGAGAGAGCTTTCTTCCCGGAAGCTTCAGGATCAGCGAGAAACTATTCTGACTCGTATCAGCCGCTATCAATGAGCTCCTACAAGTCCTATTCAAACTCCAGCTTTCAGAACATCAATGATGCCACCAACCAAAGACAGCAAGAGCAACAACACTGCTTTGTTTTGGGGACTGACTTCAAATCAACGAGGCCAAGCAAAGAGAAAGAAGCTGAGACAACAAGCCAGAGACCCCTTCACCGTTTCTTTGGGGAGTGGCCACCAAAGAACACAGATTCCTGGCTAGATCTTGCTTCCAACTCCAGAATCCCAACCGGTAAACAATGA 1023 0.4585 MMSATATARNRSPFTPSQWQELEQQALVFKYMVTGTPIPPDLIYSIKRSLDSSISSRLFPHHPIGWGCFEMGFGRKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEVSSATSTATNTSQTIPSYTRNLSLANPTITSPSFPFSPLPSSMPCDSQHFSQSYQNPSLNPFFYAQSTSSRPPDSDFSPQDATTHQLFMDSASYSHDEKDYRHVHGIREDVDERAFFPEASGSARNYSDSYQPLSMSSYKSYSNSSFQNINDATNQRQQEQQHCFVLGTDFKSTRPSKEKEAETTSQRPLHRFFGEWPPKNTDSWLDLASNSRIPTGKQ 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03058 340 MobiDBLite consensus disorder prediction 119 141 - -
Vimu11g03058 340 SMART QLQ_2 12 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vimu11g03058 340 MobiDBLite consensus disorder prediction 291 340 - -
Vimu11g03058 340 MobiDBLite consensus disorder prediction 182 203 - -
Vimu11g03058 340 MobiDBLite consensus disorder prediction 325 340 - -
Vimu11g03058 340 ProSiteProfiles WRC domain profile. 78 122 IPR014977 -
Vimu11g03058 340 MobiDBLite consensus disorder prediction 111 141 - -
Vimu11g03058 340 MobiDBLite consensus disorder prediction 294 308 - -
Vimu11g03058 340 PANTHER GROWTH-REGULATING FACTOR 5 12 327 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vimu11g03058 340 Pfam QLQ 13 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vimu11g03058 340 ProSiteProfiles QLQ domain profile. 13 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vimu11g03058 340 Pfam WRC 79 121 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03058 Vimu-Chr11 50141546 50142868 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03058 1 121 GRF Transcription Factor Family AT3G13960 69.355 3.55e-64 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vimu11g03058 WRC 1.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03058 - - gmx:100806024 578.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03058 11 50141546 50142868 Vimu11g03058 11 50141546 50142868 ECH