Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03056 ATGAATAACTGGTTAGGATTCTCTCTCACTCCCCACTTGAGGATTGATGAAGAATTTGGGAGAGAAAACCAAGAGCCTCGTGGAGAAGAAGGAGAAGGAGGAGGAGGGTATCATCCTCGTCCTTCTTCTCACCCTCACTTGTCTGTTATGCCTTTGCGCTCTGATGGCTCTCTCTGTGTTGCTGACTCCTTCAGTCACTCTGCCACTCCTCAAGAATGGAGGTATGATAGTGCAATAGGTGGAGGGAATTCCAATGAAAAAGGTCCAAAGCTTGAGGACTTTTTGGGCTGCTACTCAAACTCCCCCAATAAAGTCTTTTGTCAAGATTCTCAACATGACCAAAACCAAAGCCAGAGCAATGTTTCCAAAATCAATGTTAATGTGGCACCAAACTTTTGCACCAATGCTGATATTGAAACTGGGGATTGCCTCACAAACCCTTCTTCCTTGCTTCAATCTTTCCATGCATACAATGATAACCCACATGCCCTTATCCCGAACAATGGCATGTACAAGTCCTGGTTGGCGCAAACTCAGTTTTCTGATGTAAAACCTTCAACTGAGGCAAATGGGTGTAATTTCCAATCACTGTCTCTCACTATGAGCCCCACTGTGCAAAATGGGGTGGGGGCAATTTCCTCTGTTCAAGCTCTTGATGACAATAGGAAACGGGCCATGGCTAAATCTCATGCTAGAGAGCCAGTTCCTCGCAAATCCATTGACACTTTTGGGCAGAGAACCTCTCAATACCGTGGCATAGATGGACTGGGAGATATGAAGCCCATTTATGGGACAACAGTTGCAGAAAGGAAGGGCAGACAAGGAAAGGAAGGCAAGTCTACCTTGGTGAGTGACACTCCTTCACACGCAATGGTTGTGTATCTTTACTCCTTTACCATCTTTGTAAATCTTACCGAAAACTGGTTAGATACGCTACTAGATATGAAGCATTGGAAAGTGTGCTTGGGTTCTGAAGATGATTTATCGGAAGAAAAAGCAGCAAGGGCTTATGACTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTTTAAGCACTTATGAGAAGGAACTTGAAGAGATGAAGCACATGACCAGGCAAGAATTTGTCGCCAATTTAAGAAGGAAGAGCAGTGGATTTTCAAGAGGGGCATCTGTGTATAGAGGTGTCACAAGGCACCATCAACATGGAAGGTGGCAGGCCCGAATTGGAAGGGTTGCAGGAAACAAGGACTTGTATCTTGGCACTCAAGAAGAAGCTGCCGAAGCATACGATATTGCAGCAATCAAGTTCAGAGGAACAAGTGCTGTGACCAACTTTGACATAAGTAGGTATGATGTGAAGAGAATCTGCTCAAGTTCCACACTGATTGCAGGAGATCTTGCAAAGCGGTCCCCCAAAAAAGAGTCACCAGCTTCTGTTGCTGCGGATGACATCAACACAAGCAGTTCTTCTGTGCCGTCTCAGCCAACTTCTTTGGGAATAACCGATGCTGAACATTCTGATGAGTTGTCCAACATGATGTGGAATGCCAACAACAGTGATGAACAACAAGCACACAACGAGAGTGTTAACATGAACAATGTGAGTGAATCATCACAGCAAGTTTCTCCAAGTAACAACAACAACAACAAGGTTGGTTTGAACCATGAAAGTCCTCCCAAGTGTTCTGTGGGGCTACCGAACGAGTTTGGAGTGAGTGGAGCAGATTATGGACATGGGTACTTCAGCCTGGAAGGACCAAAATATGATGATGATGATGATGATGGGAACACTGAAAACGACCAGATGAGCAGCAACAGGCTTGGAAACATGGGACTTGTTAATCAAGTTCCGATAAACATTAGCTTAGGAAAGATGAGATGGGAGCATTATTGGATGATTATTGTAGTATTTGGTAAGAAGGGTATGTCAGTAGTAGTGGTGATTCCTTATGTGTTTTCTGTTGTTGGTAGGTAG 1971 0.4434 MNNWLGFSLTPHLRIDEEFGRENQEPRGEEGEGGGGYHPRPSSHPHLSVMPLRSDGSLCVADSFSHSATPQEWRYDSAIGGGNSNEKGPKLEDFLGCYSNSPNKVFCQDSQHDQNQSQSNVSKINVNVAPNFCTNADIETGDCLTNPSSLLQSFHAYNDNPHALIPNNGMYKSWLAQTQFSDVKPSTEANGCNFQSLSLTMSPTVQNGVGAISSVQALDDNRKRAMAKSHAREPVPRKSIDTFGQRTSQYRGIDGLGDMKPIYGTTVAERKGRQGKEGKSTLVSDTPSHAMVVYLYSFTIFVNLTENWLDTLLDMKHWKVCLGSEDDLSEEKAARAYDLAALKYWGPTTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKKESPASVAADDINTSSSSVPSQPTSLGITDAEHSDELSNMMWNANNSDEQQAHNESVNMNNVSESSQQVSPSNNNNNKVGLNHESPPKCSVGLPNEFGVSGADYGHGYFSLEGPKYDDDDDDGNTENDQMSSNRLGNMGLVNQVPINISLGKMRWEHYWMIIVVFGKKGMSVVVVIPYVFSVVGR 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03056 656 ProSiteProfiles AP2/ERF domain profile. 390 445 IPR001471 GO:0003700|GO:0006355
Vimu11g03056 656 MobiDBLite consensus disorder prediction 479 500 - -
Vimu11g03056 656 SMART rav1_2 390 451 IPR001471 GO:0003700|GO:0006355
Vimu11g03056 656 SMART rav1_2 315 360 IPR001471 GO:0003700|GO:0006355
Vimu11g03056 656 MobiDBLite consensus disorder prediction 585 607 - -
Vimu11g03056 656 Gene3D AP2/ERF domain 390 447 IPR036955 GO:0003700|GO:0006355
Vimu11g03056 656 Gene3D AP2/ERF domain 303 356 IPR036955 GO:0003700|GO:0006355
Vimu11g03056 656 MobiDBLite consensus disorder prediction 465 500 - -
Vimu11g03056 656 SUPERFAMILY DNA-binding domain 389 447 IPR016177 GO:0003677
Vimu11g03056 656 ProSiteProfiles AP2/ERF domain profile. 249 354 IPR001471 GO:0003700|GO:0006355
Vimu11g03056 656 MobiDBLite consensus disorder prediction 520 554 - -
Vimu11g03056 656 MobiDBLite consensus disorder prediction 15 51 - -
Vimu11g03056 656 SUPERFAMILY DNA-binding domain 329 356 IPR016177 GO:0003677
Vimu11g03056 656 MobiDBLite consensus disorder prediction 15 34 - -
Vimu11g03056 656 CDD AP2 389 447 IPR001471 GO:0003700|GO:0006355
Vimu11g03056 656 MobiDBLite consensus disorder prediction 520 558 - -
Vimu11g03056 656 Pfam AP2 domain 389 437 IPR001471 GO:0003700|GO:0006355
Vimu11g03056 656 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 86 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03056 Vimu-Chr11 50120573 50124058 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03056 1 470 AP2-EREBP Transcription Factor Family AT1G72570 41.313 1.24e-94 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vimu11g03056 AP2 1.5e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03056 K09285 - gmx:100805489 815.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03056 11 50120573 50124058 Vimu11g03056 11 50120573 50124058 ECH