Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03054 ATGGGAAGAAGTCCTTGTTGTTCTAAAGAAGGTTTGAACAAAGGAGCATGGACAGCTCTGGAAGATAAAATTCTCACGGAATACATTAACATCCATGGCGAAGGAAAATGGAGACACTTGCCCAAAAGAGCAGGTCTTAAGAGATGCGGGAAAAGTTGCAGACTGAGATGGTTGAATTATCTAAGACCTGGCATTAAGAGAGGCAACATTACTAATGATGAAGAGGAACTAATTATCAGGCTTCACAAGCTTCTAGGAAACAGGTGGTCCTTGATTGCTGGACGGCTTCCAGGACGAACAGACAATGAAATCAAGAATTATTGGAACACCAACATTGGAAGGAAACTTCAGAATGGCAGCCCAGGATACTCCATTACAAATGGTGGTGCACGAAGCACTTTAAACACGGTTCAGCATGATCAGAACGTGAAGAACCAAGAATGGCAATACGACAAAGGTTCGTGTCTTGTACAGACTAAAGCAACAAGGTGGAGTAAGGTCACAGTCAGTGACGAAATCAGTCACCATAATGATGAAGACAATAAGAGCAATGTTGGTGATCATACGAAAATGAAGGCCTTTCTGGTGTCTCCGTCTTCAGAGAGTAACAATGATCCAGTTTTGAATTTCATGGAAAATCTTGAAATGGATGGCAGTTTCTTCTCGGAGCTACTCAAGATGGATTTTCCTGAATCATCTTGTCAAGGAAACAAGATACTAGAAGATAATGATAACCCTAGTTCGGTTGAGAAAGGGTATTTATCTCCAAAATCATCCTGCGAAACCTCTCACTTTTCTTGGGGTGATTCACTGTATGACCCGAATTTTGAATTTCTACCAGTGACAACTTTTACAGAGACCGGATTTGATTGGCTATGA 879 0.413 MGRSPCCSKEGLNKGAWTALEDKILTEYINIHGEGKWRHLPKRAGLKRCGKSCRLRWLNYLRPGIKRGNITNDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNIGRKLQNGSPGYSITNGGARSTLNTVQHDQNVKNQEWQYDKGSCLVQTKATRWSKVTVSDEISHHNDEDNKSNVGDHTKMKAFLVSPSSESNNDPVLNFMENLEMDGSFFSELLKMDFPESSCQGNKILEDNDNPSSVEKGYLSPKSSCETSHFSWGDSLYDPNFEFLPVTTFTETGFDWL 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03054 292 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vimu11g03054 292 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Vimu11g03054 292 Gene3D - 71 149 - -
Vimu11g03054 292 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vimu11g03054 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vimu11g03054 292 CDD SANT 16 61 IPR001005 -
Vimu11g03054 292 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 202 - -
Vimu11g03054 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vimu11g03054 292 FunFam MYB-related transcription factor 13 66 - -
Vimu11g03054 292 CDD SANT 71 112 IPR001005 -
Vimu11g03054 292 Gene3D - 14 66 - -
Vimu11g03054 292 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vimu11g03054 292 SMART sant 66 114 IPR001005 -
Vimu11g03054 292 SMART sant 13 63 IPR001005 -
Vimu11g03054 292 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03054 Vimu-Chr11 50102060 50103274 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03054 1 116 MYB Transcription Factor Family AT2G16720 75.862 1.29e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu11g03054 Myb_DNA-binding 2.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03054 K09422 - gmx:100809225 480.33