Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03053 ATGGGAAGAAGACCATGCTGTCCCAAAGAGATCAACAAAGGTGCTTGGTCTCGAGAAGAAGATGAAACCCTCTCCAAATATGTTGCCATCCATGGAGAAGGAAAATGGCAGAAGGTTGCCCTAAATGCAGGTTTAAAGCGATGTGGAAAAAGCTGCAGACAAAGGTGGCTGAACTATCTCAAGCCTGGTATAAAAAGAGGTGACATATCAGTGGATGAAGAAGATATGATTATCAGACTTCATCGTCTTCTTGGTAACAGATGGGCATTGATAGCAAAGAGGCTACCTGGACGAACAGACAATGAAATCAAGAACTACTGGAACACCAATCTGTCAAAGAAGTTACAGAAACATGGTACACCATCATTATCTGTTTCTTCACCTCAAAACAAACGTAATGAAGAAGAGAAGATCAAGCAAGTTCATGTAGCACCGGAAGCTCCACGCCCTAGGAGAATCAGTGCAGTTGAATACAGTAAAATTATGGAAAATAATAGGTGTAGTACTACTACTCCCAGTCCCTCAAATAAAGTGGAGGGTAGTAGTGATGAAGCTTCTTTCAGTGATTTCCTGATCGATATTGATCAAAGCCAGTTATTGATTGGTGATGATTCAAACTCAAAGGTCCCACAAATGGAGGAAGAGCACATCAACAAACAGGTAGGCTTAACCAACAGTCCTAGCTCATCATCACCTTCTGATCATTGTCACCATCTCTTGGCAGAGAAATTTGACCCTCTGGAGACCCTCTTGGATGTTGAACTCAAGAGAATGGCTTCCTTTCTTGGACTTGAAAATGATTGA 804 0.4179 MGRRPCCPKEINKGAWSREEDETLSKYVAIHGEGKWQKVALNAGLKRCGKSCRQRWLNYLKPGIKRGDISVDEEDMIIRLHRLLGNRWALIAKRLPGRTDNEIKNYWNTNLSKKLQKHGTPSLSVSSPQNKRNEEEKIKQVHVAPEAPRPRRISAVEYSKIMENNRCSTTTPSPSNKVEGSSDEASFSDFLIDIDQSQLLIGDDSNSKVPQMEEEHINKQVGLTNSPSSSSPSDHCHHLLAEKFDPLETLLDVELKRMASFLGLEND 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03053 267 CDD SANT 70 111 IPR001005 -
Vimu11g03053 267 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Vimu11g03053 267 MobiDBLite consensus disorder prediction 130 146 - -
Vimu11g03053 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 64 IPR017930 -
Vimu11g03053 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Vimu11g03053 267 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Vimu11g03053 267 CDD SANT 15 60 IPR001005 -
Vimu11g03053 267 Gene3D - 69 142 - -
Vimu11g03053 267 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Vimu11g03053 267 MobiDBLite consensus disorder prediction 115 147 - -
Vimu11g03053 267 SMART sant 12 62 IPR001005 -
Vimu11g03053 267 SMART sant 65 113 IPR001005 -
Vimu11g03053 267 FunFam Transcription factor TT2 69 141 - -
Vimu11g03053 267 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vimu11g03053 267 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Vimu11g03053 267 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 205 - -
Vimu11g03053 267 MobiDBLite consensus disorder prediction 115 129 - -
Vimu11g03053 267 Gene3D - 10 66 - -
Vimu11g03053 267 FunFam MYB-related transcription factor 12 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03053 Vimu-Chr11 50084764 50086209 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03053 1 159 MYB Transcription Factor Family AT4G09460 53.750 4.71e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu11g03053 Myb_DNA-binding 3.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03053 K09422 - gmx:547568 436.417