Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03044 ATGCAGTCTGTAGTTAATCCAATGTCTTTTCAAGTTTCTCATAAAATCAAATATGTTGCATGCATCTGCCTCGTGTTTGTAACATCTTCTACATCTTCCATTGACACTTCTCAAATAAAGTATGATGTATTTGTTAGCTTCAGAGGTGAAGATGTCCGTAGAGGTTTCCTTAGCCATTTGATCGAGGCATTTTCTCAGAAGCAAATTGCTTTCTTCGTAGATGATAGCATTCAAAAAGGGGAAGAACTATCTGAAGCACTATTTGGAGCAATTGAAGAATCATACATTTCGTTGGTTATATTTTCAGAAAACTATGCTTCTTCAAGATGGTGTTTGTCAGAACTTGAGAAAATTATGGAGTGCAGGAGAAAAAATGGACAAACTGTAGTGCCTATTTTCTACAAAGTTGACCCCTCAGACATACGACATCAAAGGAGGACTTATGGAGATGCCTTTGTCAAACATGAAAGAAACTATTCCTTGACTACTGTGCAAACCTGGCGATCAGCTCTGAGTGAATCTGCTAATCTATCAGGATTTCATTTATCGAAATTTCCAGATGAAGCTGAACTTGTTAAAAGGATAGTTAAATTTGTCTGGAGTACGTTGAATCATGTTCACCAAGTTAAGTCCAAAGGGCTTGTTGGAATTGGTAAACGAATTGCACAAGTTGAATCATTGCTGCAATTAGAAACAAAAGATGTTCGCATGATTGGAATTTGGGGCATGGGTGGTATTGGTAAGACAACTATTGCTCAAGAAGTATATAATAAACTGTGTTTTAAATATGATAGTTGTTGTTTTCTGGCTAACATAAGGGAGGAGTCGTGGAGACATGGAATAAACTCTCTGAAGGAAAAGCTTTTCTCAACATTATTAAGAGAAGAACATTTGAAAATTGGCAGACCTGATGGGTTCCAGAAGTTAGCTGATAGAAGACTTCATCGCATGAAGGTTCTTATTATTCTCGATGACGTCGGTGACGCAGAGCAACTAGAAAATTTAGCCAGAACAAATTGGTTTGGATCTGGTAGTAGAATCATTGTGACAACCAGAGATAAACAGGTGCTTGCTGAGGAGTCTGCCAGTGTATACCATGTTGAAGCCTTAAACTTTGATGAATCTCTGCGACTTTTCAATTTAAATGCCTTTAAGCAAAAACATATAGAGGCAGAGTACGAGGAGCTGTCAAAGAAAGCAGTTGAGTACGCCAAAGGCATTCCGTTTGTTCTTAAAGTTCTGGGTCACCGACTTCATGGGAAAGACAGAGAGATATGGGAAAGTGAATTAGAAAGACAAGAAGTGCACAACAAAAAGGTTCATGATATTATTAAATCGAGTTACTATGATCTTGAGGATGATGAAAAGAGGATTTTTTTGGACATTGCATGTTTTTTTTATGGGCAGCAACTGCAGGTAAAGTACATAGATTTTTTATTGAAAGATCGTGATTATTCAGTGGCTGCGGGATTGGAAAGGTTGAAGGATAAAGCTTTTATCAGTATTTCTCAAGAAAATACTGTATCAATGCATGACATCATACAAGAAACTGCTTGGCAGATTGCTGGCGAAGAATCCATTAAAAACCCCAGAAGAAATCAGATTCGACTATTTGTTCCTGACGACATTTATGAAGTACTAACATACAGCAAGGGTAACGAGGCTATCAGAAGTATAGTGGTCAACTTGTTGAGAATCAAGCAACTACATTTGAAGCCACAAGTCTTTACTAAGATGAGCAAGCTCCATTTTCTAAATATTTACACTGCAGGAACTCGCGATATTCGCTTCTACGAACCATGGGGCTTGTATCTTCATCAAGGGCTTGAATCTCTGCCGAATGAGCTAAGATATCTTGGTTGGATGCATTATCCTTTGGAATCTTTGCCTTCAAACTTTTCTGCAGAAAATCTAGTCGAGTTGCACTTGCCATACAGCCGGGTGAAAAAACTATGGCATGAAGTGCCGGATCTTGTGAATTTAAAGGTCTTTATGCTGTATTCATCCTCAAACATAAAGGAGCTACCAGACTTTTCAAAGGCTCCAAACCTTGAAGTAATAGATCTTCGATCCTGTGTAGGGTTGACCAGTGTTCATCCATCAGTTTTCTATCTCAAAAAGCTTGAGAAATTAGATTTGGATGAATGCAGATCCCTTACAAGCCTTCGAAGCAATGTCCAAATGGAATCCCTTCGTTACCTCTCCCTCTTTAAATGCATGGAACTAAAAGATTTCTCGGTGACCTCAAAGAATATGATAATGTTGAATTTAGAAAACACAGATATCAAGCAACTCCCTTCATCTTTTGGATCTCAAAGCAAGCTTGAAGACTTAAATCTAGCGTTCTCTTCCATTGAGAGCTTGCCTGCAAGCATGAAAGATCTTAAAAGGTTGCAACATCTTGATCTACGACACTGTAGGAATCTTAGCTCCCTACCAGAGCTTCCTCCATCTATTGAAACACTGGATTGCCGAGAATGCGTGTCATTGGAGAGTGTAAAGTTCCCTTCTATTGCTGAACAATGGAAGGAAAATAAGAAAAAGGTTGTCTTTTGGAACTGCTTGAACTTGGATGAACGTTCACTCAAGGCCATTGAGACGAATGCGCGAATTAACATGGTGAAATTTGCACACCGGCATTTGTCTACATCTGGTGATGCTCACGCTATTTATGTGTATCCGGGAAGCCAGGTTCCAGAATGGTTGACGCATAAGACCACACATGATGATGATGATGGTGATGATGATTATGATGATGATGATGATGATGATGATAGCATAACTTTTGCTCCAAATCCCTCTCACCTGGGCTACATTTTTTGCTTGATTTTACCGGCAGTGCAGTATTCGGAAAGGGTTTTGAAATTGACGGTCAGTACTGGAGGTGAAGATGAAGGTGACAGTGTGATTGTGTACTTAGACAGACCACATCATACTATTAAGTCGGATCACGTGTATCTGATGTACAACAAAGCATGTTCTCGCTTTCTAGCCAGTCGTGCCAAACAGCAACCAATGCTAAAAATTAAGGTTACAGTAGCAACACTATTAATCTCATCAAAATACATAGACGTGCGGTTAAGAGGGTTTGGCGTGAGCACAATCAGCAACTTTCTTCAGAAACAACAATTGTGTGATACTCGTATTCTAAAGGAACATTGTGAAGTTTGTCCAGATGCTCTGTGA 3186 0.3911 MQSVVNPMSFQVSHKIKYVACICLVFVTSSTSSIDTSQIKYDVFVSFRGEDVRRGFLSHLIEAFSQKQIAFFVDDSIQKGEELSEALFGAIEESYISLVIFSENYASSRWCLSELEKIMECRRKNGQTVVPIFYKVDPSDIRHQRRTYGDAFVKHERNYSLTTVQTWRSALSESANLSGFHLSKFPDEAELVKRIVKFVWSTLNHVHQVKSKGLVGIGKRIAQVESLLQLETKDVRMIGIWGMGGIGKTTIAQEVYNKLCFKYDSCCFLANIREESWRHGINSLKEKLFSTLLREEHLKIGRPDGFQKLADRRLHRMKVLIILDDVGDAEQLENLARTNWFGSGSRIIVTTRDKQVLAEESASVYHVEALNFDESLRLFNLNAFKQKHIEAEYEELSKKAVEYAKGIPFVLKVLGHRLHGKDREIWESELERQEVHNKKVHDIIKSSYYDLEDDEKRIFLDIACFFYGQQLQVKYIDFLLKDRDYSVAAGLERLKDKAFISISQENTVSMHDIIQETAWQIAGEESIKNPRRNQIRLFVPDDIYEVLTYSKGNEAIRSIVVNLLRIKQLHLKPQVFTKMSKLHFLNIYTAGTRDIRFYEPWGLYLHQGLESLPNELRYLGWMHYPLESLPSNFSAENLVELHLPYSRVKKLWHEVPDLVNLKVFMLYSSSNIKELPDFSKAPNLEVIDLRSCVGLTSVHPSVFYLKKLEKLDLDECRSLTSLRSNVQMESLRYLSLFKCMELKDFSVTSKNMIMLNLENTDIKQLPSSFGSQSKLEDLNLAFSSIESLPASMKDLKRLQHLDLRHCRNLSSLPELPPSIETLDCRECVSLESVKFPSIAEQWKENKKKVVFWNCLNLDERSLKAIETNARINMVKFAHRHLSTSGDAHAIYVYPGSQVPEWLTHKTTHDDDDGDDDYDDDDDDDDSITFAPNPSHLGYIFCLILPAVQYSERVLKLTVSTGGEDEGDSVIVYLDRPHHTIKSDHVYLMYNKACSRFLASRAKQQPMLKIKVTVATLLISSKYIDVRLRGFGVSTISNFLQKQQLCDTRILKEHCEVCPDAL 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03044 1061 Gene3D Ribonuclease Inhibitor 547 750 IPR032675 -
Vimu11g03044 1061 ProSiteProfiles TIR domain profile. 39 203 IPR000157 GO:0007165
Vimu11g03044 1061 MobiDBLite consensus disorder prediction 903 925 - -
Vimu11g03044 1061 Gene3D Ribonuclease Inhibitor 751 894 IPR032675 -
Vimu11g03044 1061 Gene3D - 369 452 IPR042197 -
Vimu11g03044 1061 SMART till_3 40 177 IPR000157 GO:0007165
Vimu11g03044 1061 SUPERFAMILY L domain-like 560 856 - -
Vimu11g03044 1061 Gene3D - 35 206 IPR035897 -
Vimu11g03044 1061 Gene3D - 207 368 IPR027417 -
Vimu11g03044 1061 PRINTS Disease resistance protein signature 404 418 - -
Vimu11g03044 1061 PRINTS Disease resistance protein signature 237 252 - -
Vimu11g03044 1061 PRINTS Disease resistance protein signature 313 327 - -
Vimu11g03044 1061 PRINTS Disease resistance protein signature 703 719 - -
Vimu11g03044 1061 Pfam TIR domain 40 213 IPR000157 GO:0007165
Vimu11g03044 1061 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 41 829 IPR044974 GO:0006952
Vimu11g03044 1061 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 462 IPR027417 -
Vimu11g03044 1061 SUPERFAMILY "Winged helix" DNA-binding domain 438 547 IPR036390 -
Vimu11g03044 1061 SUPERFAMILY Toll/Interleukin receptor TIR domain 30 180 IPR035897 -
Vimu11g03044 1061 Pfam NB-ARC domain 231 428 IPR002182 GO:0043531
Vimu11g03044 1061 FunFam Disease resistance protein (TIR-NBS-LRR class) 37 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03044 Vimu-Chr11 50019426 50022997 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03044 36 814 WRKY Transcription Factor Family AT4G12020 33.375 8.64e-103 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03044 - - pvu:PHAVU_010G131900g 1546.18