Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03043 ATGACATATTCTAATTCTTTCCGAGTTTTTGATAGAATCAAACGTGTAATATTTGTGTGTGTCTTGCTGGCAGCGATAGACAATAATAATAGTAATAATTCTTCATATCCAGTGACAGATTTTGCTTATGATAATGACTCCCCTCAGATAAAGTTTGATGTGTTTGTTAGCTTTAGAGGCACAGATATCCGGCAAGATTTCCTTAGCCATTTGATTGAGGCGTTTTCTCAAAGGCATATTAATGCGTTTGTGGATAACAAGGTTGTCAGAGGAGATGGAATGTCTGAAGCACTCATTCGTGCAATTGAAGGATCATCAATTTCGTTGATTATATTTTCACAAGACTATGCTTCTTCACACTGGTGTTTGTCAGAGCTTGTGAAAATTGTTGAGTGTAGAAAAAAAAATGGCCAGATTGTACTGCCTGTCTTCTACAAAGTGGATCCTGCACATGTAAGACATCAGAAAGGGACTTATGAACATGCCTTCGCTAAACATCAGATAAGATATAGTTTGACCACTATGCAAATCTGGAGAACCGCTTTGACTGAAGCTGCTAATCTGGCAGGATTTCATTCATCAACTTTTCGGTATGCAGTTGAGGTTATGCTTTTTCATCAACTTTTCGGTATGTGTTTGATACTTACACCTTTTCTATGGCACAGGGACGAAGCTGAGTTTATTAAAGAGATAGTTAAGTGCGTGTTGAGTAGATTGAATCAAGTGCAACAAGGTAAATCCAAAGGGCTTGTTGGAGTTGGTAAACGAATTGCACATGTTGAATCACTGCTACAATCAGAAGAGCCTGATGTACGTATTATGGGAATATGGGGCATGGGTGGCATTGGTAAAACAACCATTGCACAAGAAGTATATGACAAGTTGTGCTTTGAATATGAAGGTTGCTGTTTTTTGGCTAACATAAGAGAAGAATCGGGAAGACTTGGAATAATCTCTTTAAAGAAGAAGCTTTTCTCAACATTATTAGGAGGAGAGGATTTGAAAATTGACACACCTAACGGATTGCCTCAATATATTGAGAGAAGGCTTCGACGTATGAAAGTTCTCATCATTCTTGATGATGTCAATGATTCAGATCAACTTGAAGTTTTAGCTGGAACACATGATTGGTTTGGATCAGGTAGCAGAATCATCATAACAACCAGAGATAAACAGGTACTTGCTAGAGAGTTTGCTAGTATATATGAGGTAGAGGCATTAAACTTTGATGAATCCTTAAGGCTTTTCAATTTGAATGCCTTTAAGCAAAATCATCTTGAAAGTGAGTACCATGAGCTTTCAAAGAAAGTGGTCAACTATGCAAAAGGGATTCCACTAGTTCTTAAAGTTTTGGGTCACCTTCTTCATGGAAAAGATAAGGAAACTTGGGAAAGCCAATTGGAAAGACTCAAAAAAGTACAGAACAAAAAGGTCCATGATATTATTAAATTGAGTTACAATGATCTTGATCGGGATGAAAAGAAGATATTTTTAGATATTGCATGCTTTTTCGATGGACTGAATCTGAAGGTAAAGCATATGAATTTTTTATTGAAAGACCATGATTATTCAGTGGTTGCCGGATTAGAAAGGTTGAAAGATAAAGCTCTTATCAGTGTTTCTCAAGAAAATGGTGTATCGATGCACAACATTATACAAGAAACAGCTTGGCAGATTGCTCGAGAAGAATCGATTGAAAATCCTAGAAGCCAGATTCGACTACTGGATCCTGAGGACATTTATCATGGTGACGAGGCCATCAGAAGCATAGTCATCAACTTGTCAAGAATCAAACAACTGCAATTAAACCCTCAAGTATTTGCAAGGATGAGCAAACTACATTTTCTAGATTTTTATAGTAAAGGGTCTTGTAGTTGCCTCGGGGATCAAGGAGGCTTGTATCTTCCACAAGGGCTTGAATCTTTATCAAATGAACTAAGATATCTTCGTTGGACCCATTATCCTTTGGAATCTTTGCCTTCAAAGTTTTCTGCTGAAAATCTTGTTGAATTGAACTTACCAAATAGCAGACTGAAAAAACTTTGGCAAGAAGCACCGGATCTTGTTAACTTAAGGGTCCTTATACTTCATTCATCAACAAGACTAAAGGAGCTACCAAATCTTTCAAAGGCCACAAATCTTAAAGTGATAGATCTCAGATTTTGTGTACGTCTGACTAGTGTGCATTCATCAATTTTTTCTCTTAGAAATATTGAGAAATTGTATCTAGGTGGCTGCCTTTCCCTTAGAAGCCTTCGAAGCAATGTCCATTTGGACTCTCTTCGTTATCTCTCCCTCTATGGATGCATGTCACTGAAGGATTTCTCAGTGACCTCAAAGAATATGGTAAAGTTGAATTTAGAACTCACTGGAATCAAACAACTACCTTCATCATTTGGACTTCAAAGCAACCTCCAAAAGCTACGGTTGGCATACACTTACATTGACCACTTGCCAACAAGTATCAAGCATCTTACAAGACTGCGACATCTTGATCTAAGATATTGCAGAGAGCTTCTTACTCTACCAGAGCTTCCAGCGTCACTTGAAACACTAGATGCCCGTGGATGTATATCACTTGAGACTGTAACGTTCCCTTCTACTGCTGGTGAACAACTGAAGGAAAATAAGAAAAGAGTTGCTTTCTGGAACTGCTTGAAATTGGATGAACCTTCTCTCACTGCTATTGAGTTGAATGCACAAATTAACATGATGAAATTTGCACACCAACATTTTTCCCTATTTGGGGATGCTCAAAGCACCTATGTGTATCCTGGAAGTAAAGTTCCAGAATGGCTGGTGCATAAGACGACAGATGATGACTTCGTGATTATTGATCTCTCTTCTGTTCTTTCTCCACACTCCTCACACATAGGCTTCATTTTTGGCTTTGTTGTTCCAGAAGTCCCATTTGGGGGTTCAGCTTTGGAATTTAAGATTAGTACTAGTGGTGAAGGTAGCCATATCAATGTGTACATGGACAGACCTAGACATCGTATTACATCGGATCATGTGTATCTAATGTATGACCAGGCATGTTCTCGCTACCTAAACGGTCTTGCCAAACATGAGCCAAGGTTGAAAATTAAGGTTGCATTGGCATCTCGAACGCTCACATCCAAGTACGTACCATTAAAGCTAAGAGCTTTTGGAATCAGTGCAATAAATACTACAGACTTTCTCAGTTTTGTTCAAAAAGTAAAATTTGGTGATAATGTTTCAAATAATAGTGAAAGTCGCTCCGCCAAGAACTTTGAAGAGAGAATTTCATTGAAAGAGAGAAAAGACCACTAG 3294 0.3813 MTYSNSFRVFDRIKRVIFVCVLLAAIDNNNSNNSSYPVTDFAYDNDSPQIKFDVFVSFRGTDIRQDFLSHLIEAFSQRHINAFVDNKVVRGDGMSEALIRAIEGSSISLIIFSQDYASSHWCLSELVKIVECRKKNGQIVLPVFYKVDPAHVRHQKGTYEHAFAKHQIRYSLTTMQIWRTALTEAANLAGFHSSTFRYAVEVMLFHQLFGMCLILTPFLWHRDEAEFIKEIVKCVLSRLNQVQQGKSKGLVGVGKRIAHVESLLQSEEPDVRIMGIWGMGGIGKTTIAQEVYDKLCFEYEGCCFLANIREESGRLGIISLKKKLFSTLLGGEDLKIDTPNGLPQYIERRLRRMKVLIILDDVNDSDQLEVLAGTHDWFGSGSRIIITTRDKQVLAREFASIYEVEALNFDESLRLFNLNAFKQNHLESEYHELSKKVVNYAKGIPLVLKVLGHLLHGKDKETWESQLERLKKVQNKKVHDIIKLSYNDLDRDEKKIFLDIACFFDGLNLKVKHMNFLLKDHDYSVVAGLERLKDKALISVSQENGVSMHNIIQETAWQIAREESIENPRSQIRLLDPEDIYHGDEAIRSIVINLSRIKQLQLNPQVFARMSKLHFLDFYSKGSCSCLGDQGGLYLPQGLESLSNELRYLRWTHYPLESLPSKFSAENLVELNLPNSRLKKLWQEAPDLVNLRVLILHSSTRLKELPNLSKATNLKVIDLRFCVRLTSVHSSIFSLRNIEKLYLGGCLSLRSLRSNVHLDSLRYLSLYGCMSLKDFSVTSKNMVKLNLELTGIKQLPSSFGLQSNLQKLRLAYTYIDHLPTSIKHLTRLRHLDLRYCRELLTLPELPASLETLDARGCISLETVTFPSTAGEQLKENKKRVAFWNCLKLDEPSLTAIELNAQINMMKFAHQHFSLFGDAQSTYVYPGSKVPEWLVHKTTDDDFVIIDLSSVLSPHSSHIGFIFGFVVPEVPFGGSALEFKISTSGEGSHINVYMDRPRHRITSDHVYLMYDQACSRYLNGLAKHEPRLKIKVALASRTLTSKYVPLKLRAFGISAINTTDFLSFVQKVKFGDNVSNNSESRSAKNFEERISLKERKDH 1097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03043 1097 Pfam Leucine Rich Repeat 667 684 IPR011713 -
Vimu11g03043 1097 SUPERFAMILY "Winged helix" DNA-binding domain 476 581 IPR036390 -
Vimu11g03043 1097 SMART till_3 51 188 IPR000157 GO:0007165
Vimu11g03043 1097 Pfam TIR domain 51 247 IPR000157 GO:0007165
Vimu11g03043 1097 MobiDBLite consensus disorder prediction 1076 1097 - -
Vimu11g03043 1097 FunFam Disease resistance protein (TIR-NBS-LRR class) 48 204 - -
Vimu11g03043 1097 Pfam NB-ARC domain 261 488 IPR002182 GO:0043531
Vimu11g03043 1097 ProSiteProfiles TIR domain profile. 50 239 IPR000157 GO:0007165
Vimu11g03043 1097 Gene3D - 242 401 IPR027417 -
Vimu11g03043 1097 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 53 776 IPR044974 GO:0006952
Vimu11g03043 1097 MobiDBLite consensus disorder prediction 1081 1097 - -
Vimu11g03043 1097 SUPERFAMILY L domain-like 588 861 - -
Vimu11g03043 1097 Gene3D Ribonuclease Inhibitor 774 896 IPR032675 -
Vimu11g03043 1097 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 247 500 IPR027417 -
Vimu11g03043 1097 Gene3D Ribonuclease Inhibitor 582 773 IPR032675 -
Vimu11g03043 1097 Gene3D - 406 490 IPR042197 -
Vimu11g03043 1097 Gene3D - 49 241 IPR035897 -
Vimu11g03043 1097 SUPERFAMILY Toll/Interleukin receptor TIR domain 45 191 IPR035897 -
Vimu11g03043 1097 PRINTS Disease resistance protein signature 823 839 - -
Vimu11g03043 1097 PRINTS Disease resistance protein signature 273 288 - -
Vimu11g03043 1097 PRINTS Disease resistance protein signature 349 363 - -
Vimu11g03043 1097 PRINTS Disease resistance protein signature 441 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03043 Vimu-Chr11 50014911 50018659 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03043 52 869 WRKY Transcription Factor Family AT4G12020 32.019 7.60e-103 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03043 - - gmx:100802823 1658.66