Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03030 ATGAAGAACTTAAATGAGAAAGGCTCTGGTTCTACCCATTTAACAGCTCCTTATGCTCTTGGATGCTCGTCATGGGGGGCTTCTTCTGAATCTGATGTTCAACAATCATCCATGTCCAGAGGTTTGACCTTGAAAATGGGTGTTCTGCCGCAGCAATGCCATAAGAGTAAGCCATTGAATTTTCAATATCAAGATCGAGATTCTTCTTCATCTCAATCAACTGGTCAGTCTTATCCGGAAGTTGGTTCAGCGCAATCAGGTCAATTTTCAGTCCAGTGTAGCAATTCTTCTGCTTGTTCTACACTTAACACAACTGGGAGAAAGAGTATAGAAGGTGTAATCAGGTCATCTGTTCGGGGTCAGGATTTTACCTTCCCTCCTTCACAAATGTGTCAAAACCAGCCACATGCTCATACTGCATTCCATCTTGCTGAGCCATGCTTTAGTGGCCTACTAGCTTCTCCATATGGCCCACAACCTAATATTCATCCTGCTCAACTGATAGGAATGGCTACTGCTAGAATTCCTCTGCCACTTGATCTCAGTGAGGAGCCTATATTTGTGAATGCAAAACAGTACCATGCTATTCTGAGGCGCAGACAATACCGGGCAAAACTTGATGCACAGAACAAACTCATCAAAGAACGGAAACCATATCTTCACGAGTCTCGCCATCTACATGCATTGAAGAGAGCTAGAGGTTCTGGTGGTCGCTTCTTGAATACAAAAAAGCACGAAGAATCTAAACCAACTTCACATAACCATGACATAGATGTTTCAAGGTGTACTAATTTGAATCTGAGGGGAAACATGTCAGAATCTAAGGCTCGGCTAATGGAAAAGTTGAACTACAGAAATGGTGCTTCCACAGCCACATGTTCAGATATTTCTAGTGCATCTAATAGTGGTGATCTCTTCCAGCAACATCAACCTGACATTAGATTATGTGTTTACCCTTCTCATATTGGAAGGAACATGCAGGGTTACTCTGCTGATATCGGTGGTGGTGGTGGCGGCGGCGGCGGTGGTGGAAACCAGCATCGTCTATCAGTCCTTATGTGA 1062 0.4369 MKNLNEKGSGSTHLTAPYALGCSSWGASSESDVQQSSMSRGLTLKMGVLPQQCHKSKPLNFQYQDRDSSSSQSTGQSYPEVGSAQSGQFSVQCSNSSACSTLNTTGRKSIEGVIRSSVRGQDFTFPPSQMCQNQPHAHTAFHLAEPCFSGLLASPYGPQPNIHPAQLIGMATARIPLPLDLSEEPIFVNAKQYHAILRRRQYRAKLDAQNKLIKERKPYLHESRHLHALKRARGSGGRFLNTKKHEESKPTSHNHDIDVSRCTNLNLRGNMSESKARLMEKLNYRNGASTATCSDISSASNSGDLFQQHQPDIRLCVYPSHIGRNMQGYSADIGGGGGGGGGGGNQHRLSVLM 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03030 353 ProSiteProfiles NF-YA/HAP2 family profile. 182 242 IPR001289 GO:0003700|GO:0006355
Vimu11g03030 353 SMART cbf3 181 242 IPR001289 GO:0003700|GO:0006355
Vimu11g03030 353 MobiDBLite consensus disorder prediction 238 257 - -
Vimu11g03030 353 PRINTS CCAAT-binding transcription factor subunit B signature 216 239 IPR001289 GO:0003700|GO:0006355
Vimu11g03030 353 PRINTS CCAAT-binding transcription factor subunit B signature 185 207 IPR001289 GO:0003700|GO:0006355
Vimu11g03030 353 MobiDBLite consensus disorder prediction 239 256 - -
Vimu11g03030 353 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 184 239 IPR001289 GO:0003700|GO:0006355
Vimu11g03030 353 MobiDBLite consensus disorder prediction 62 83 - -
Vimu11g03030 353 Gene3D - 182 243 - -
Vimu11g03030 353 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 39 306 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03030 Vimu-Chr11 49916762 49919425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03030 9 351 CCAAT-HAP2 Transcription Factor Family AT1G17590 41.595 2.91e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vimu11g03030 CBFB_NFYA 3.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03030 K08064 - gmx:100500765 535.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03030 11 49916762 49919425 Vimu11g03030 11 49916762 49919425 ECH
Vimu4g00373 4 2648598 2649098 Vimu11g03030 11 49916762 49919425 PCT