Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03029 ATGGACTCGCGCACGTATAACCCACGCACGGTCGAAGAGGTTTTTAGGGATTTCAAGGGCCGAAGAGCTGCTCTCATCAAAGCCCTTACCACCGATGTTGAAGATTTCTACAACCAATGTGATCCGGAGAAGGAGAATCTGTGCTTGTATGGCTTTCCCAGTGAACAGTGGGAAGTAAATTTACCTGCTGAAGAAGTACCACCTGAGCTTCCTGAGCCTGTGCTGGGCATCAACTTTGCTAGGGATGGCATGCAAGAAAAAGACTGGCTATCTTTAGTTGCTGTCCATAGTGATGCATGGTTACTTGCTATTGCATTCTACTTTGGAGCCAGATTCGGGTTTGATAAAGCTGACAGGAAACGACTTTTCAACATGATCAACGAATTGCCAACAATATTTGAAGTTGTTACTGGTGCAGCAAAGAAGCAAGTTAAGGAGAAGTCTTCTGTTTCAAACCACAGTGGCAGCAAGTCTAAGTCCAGCTCTAAGGCACAACGAGCTCCAGAATCTCAGAGTAGACAGTCAAAGCCATCGCAACCAAAAGAAGAGGATGAAGAACTGGATGAACAAGATGATGATGAACATGGAGAGACCTTGTGTGGGGCATGTGGTGAGCATTATGGCACTGATGAATTCTGGATTTGCTGTGACATCTGTGAGAAATGGTTCCATGGTAAATGTGTGAAGATTACACCAGCTAGGGCAGAGCATATCAAACAATACAAGTGTCCCTCGTGCAGTAACAAGAGAGCTCGCCCCTGA 762 0.4567 MDSRTYNPRTVEEVFRDFKGRRAALIKALTTDVEDFYNQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDKADRKRLFNMINELPTIFEVVTGAAKKQVKEKSSVSNHSGSKSKSSSKAQRAPESQSRQSKPSQPKEEDEELDEQDDDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03029 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Vimu11g03029 253 FunFam PHD finger alfin-like protein 192 248 - -
Vimu11g03029 253 CDD PHD_AL_plant 199 249 IPR044104 -
Vimu11g03029 253 SUPERFAMILY FYVE/PHD zinc finger 189 250 IPR011011 -
Vimu11g03029 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 248 IPR013083 -
Vimu11g03029 253 SMART PHD_3 199 247 IPR001965 -
Vimu11g03029 253 MobiDBLite consensus disorder prediction 144 193 - -
Vimu11g03029 253 MobiDBLite consensus disorder prediction 149 175 - -
Vimu11g03029 253 Pfam PHD-finger 200 249 IPR019787 -
Vimu11g03029 253 PANTHER CPG BINDING PROTEIN 7 252 IPR045104 GO:0006355|GO:0042393
Vimu11g03029 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Vimu11g03029 253 Pfam Alfin 10 138 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03029 Vimu-Chr11 49903764 49912295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03029 6 252 Alfin-like Transcription Factor Family AT3G42790 76.923 1.54e-127 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vimu11g03029 Alfin 8.3e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03029 K26274 - gmx:100170700 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03029 11 49903764 49912295 Vimu4g00372 4 2643349 2647207 ECH
Vimu10g03113 10 41868207 41870735 Vimu11g03029 11 49903764 49912295 ECH
Vimu11g03029 11 49903764 49912295 Vimu11g03029 11 49903764 49912295 ECH
Vimu4g00372 4 2643349 2647207 Vimu11g03029 11 49903764 49912295 PCT