Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03028 ATGAGCATGAGAATGGCAGAGGAAGAATCTAGCGAGGAGGTTCATGTTCCGGGTGAGATTGATTGGCAAATGCTTGATAAATCCAAGTTCTTCTTCCTTGGTGCTGCTCTTTTCTCTGGGGTTTCTGCAACCCTTTACCCTGTTGTTGTGTTGAAGACTAGGCAGCAAGTGGCACAGTCCCAAGTGTCTTGCATCAACACTGCATTTTCGTTGATTAAGGGTGAGGGTTTTAGAGCATTGTACCGTGGCTTTGGGACTTCTTTGATGGGTACAATCCCTGCCAGGGCTCTTTACATGGCTGCATTAGAGGTTACCAAAAGCAATGTGGGCACGGCCACTGTTAGGTTTGGTCTTGGTGAACCCACTGCTTCTGCAGTTGCCAATGCAGCAGCTGGCTTGAGTGCAGCCATGGCAGCTCAGCTTGTGTGGACCCCTGTTGATGTTGTGAGCCAGAGGTTGATGGTTCAAGGCTGTTGTGATTCTGGAAATCCAAAGGCTTCGGCATTTCGGTACATCAATGGGATTGATGCCTTCAGGAAGATATTGAGCAATGATGGCCTTAGGGGCTTGTATAGGGGTTTTGGGATCTCAATTTTGACCTATGCCCCTTCAAACGCAGTTTGGTGGGCTTCATATTCTGTTGCACAAAGGATGGTCTGGGGTGGAGTAGGGTACTACTTGAGCAAGGGCAATGATAATGCAACTAACAGTGCTTTGAGGCCTGATACAAAAACCATGATGGCAGTTCAGGGAGTCAGTGCAGCAGTGGCTGGTGGCATGTCTGCTTTGATCACCATGCCACTGGACACCATCAAGACAAGACTGCAGGTCTTGGATGGCGACGAGAACGGCCGTCGTGGACCCACCATTATGCAGACAGTGAGGAGTCTGGTCAGGGAAGGTGGTTGGATGGCTTGTTACAGAGGATTGGGTCCTAGGTGGGCATCAATGTCAATGTCTGCAACAACAATGATCACTACTTATGAGTTCCTCAAACGACTCTCAGCGAAGAACCAAGAGGTTTTAACATAA 1032 0.4874 MSMRMAEEESSEEVHVPGEIDWQMLDKSKFFFLGAALFSGVSATLYPVVVLKTRQQVAQSQVSCINTAFSLIKGEGFRALYRGFGTSLMGTIPARALYMAALEVTKSNVGTATVRFGLGEPTASAVANAAAGLSAAMAAQLVWTPVDVVSQRLMVQGCCDSGNPKASAFRYINGIDAFRKILSNDGLRGLYRGFGISILTYAPSNAVWWASYSVAQRMVWGGVGYYLSKGNDNATNSALRPDTKTMMAVQGVSAAVAGGMSALITMPLDTIKTRLQVLDGDENGRRGPTIMQTVRSLVREGGWMACYRGLGPRWASMSMSATTMITTYEFLKRLSAKNQEVLT 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03028 343 PRINTS Mitochondrial carrier protein signature 191 209 IPR002067 GO:0055085
Vimu11g03028 343 PRINTS Mitochondrial carrier protein signature 83 103 IPR002067 GO:0055085
Vimu11g03028 343 PRINTS Mitochondrial carrier protein signature 31 44 IPR002067 GO:0055085
Vimu11g03028 343 PRINTS Mitochondrial carrier protein signature 254 276 IPR002067 GO:0055085
Vimu11g03028 343 ProSiteProfiles Solute carrier (Solcar) repeat profile. 245 334 IPR018108 -
Vimu11g03028 343 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 7 340 - -
Vimu11g03028 343 Pfam Mitochondrial carrier protein 248 338 IPR018108 -
Vimu11g03028 343 Pfam Mitochondrial carrier protein 37 108 IPR018108 -
Vimu11g03028 343 Pfam Mitochondrial carrier protein 123 219 IPR018108 -
Vimu11g03028 343 SUPERFAMILY Mitochondrial carrier 23 331 IPR023395 -
Vimu11g03028 343 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
Vimu11g03028 343 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 218 IPR018108 -
Vimu11g03028 343 Gene3D Mitochondrial carrier domain 30 341 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03028 Vimu-Chr11 49899284 49902460 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03028 1 340 Chloroplast and Mitochondria Gene Families AT1G72820 73.913 0.0 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03028 K15121 - gmx:100784616 596.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03028 11 49899284 49902460 Vimu11g03028 11 49899284 49902460 ECH