Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03017 ATGTTTTCCAATACTCCAACACCTGTTGTAATCAGAAGAGACAGCACCGTGATCGCAGTAAGCGGAGGTCGACATAGCAATGGTGCTGTCAAATGGGCTGTGGAACACCTCCTAAAGAAGAACTCCTCATGCATCCTTCTTCATGTTCGAACTAGGACCATGCTTACCCCTGATAATAATAATAATAATAATAATACTAATACTAATGATCCACCCAAAGGAGCTCGCCCACCAACTGAAGAAGAGTTGCACCAATTCTTTCTTCCCTTTAGAGGATTTTGTGCCAGAAAAGGGATATCAACAAAGGAATTGGTCTTGCATGACCTTGATGTTACAAGTGCACTCATTGCTTTCGTTGATGACAATTGTATCAGCACCCTAGTTGTTGGTGCTGCTACTTCTTCCTGGGGTTCTATTCTAAGGAGATTTAATAAAGATGATGTGTCAGCCACTTTAGCAAAATCCTTACCAGATACATGCAGTTTATATGTTATATCAAAAGGAAAAGTACAACATATTCGACCTTCAGGTCATCATGCTCATCATTATCATCATCAACATGTTGAGGCCACACCAGCTAAATCTATAAAAGATATAGTCAACTTTTTAGAAAGTGATCCATTGGAGCAGCCACACAAAGATCTCAACATTAACCAAATAGCTTTTGAAGATATAGAGAGGAAACTAATCAAAGATGCAGTAAAACACCAATCTAATAATAAACTTTGGGACTATTTACATGAAGAAACAAATTCACCAAAAGGTCCAATCGAGTACCCTCCATCACAAAATTCTTCTGCAAATAATACTCCTGGAAATAGTGACAGCACGGGGCAATCACTTGGTCCTTCTTTGACAAATAGGTTAAATGAAAACCAAAAAATTGTTCTAAACGCACACCATTCTAGGACCAATTCACACCATTCTATTAGGAACATTTCACACCATTCTAGGACCAATTCACACCATTATGGGAACAATTCTTCTATAAAAGATCAAGTAAACTTTGATATGCAGATGAGGAAATTGAAATTAGAACTACAAAAAACTGCAGAGATGTATGGTATGGCTTGCAAAGAAGCTGTTCTAGCTACACAAAAGGCAATGGAGATTGAAAAGTATAGACAAGAGAAAGAACGCAATATAGTGGAAGCAAAGCTTGCTCAGTCCAAAATGACTATGGAGTCAACAGAAATGTCAAAACACCTGGTAAAAATGGATTCTCTTAAGAGAAAGGAAGTTGAATTAAAAGCCAAAAGTGAGGAAGAAGAGACGATTAAAGCATTGCAGGAAACTCTATATAACAATATTCCCTACAGAAGATATACAATTGAAGATATTGATGCTGCAACAAATAAATTCGATAATGCTTTAAAAATTGGTGAAGGTGGATATGGTCCTGTCTTTAAAGGACTTCTTGATCACACTACTGTTGCTATTAAGGCTGTGAGACCAGATTTAGCCTATGCAGAAAAACAATTTCAACAGGAGACAAAGCCAGAACCCCTGGTGCATCGTGACTTGAAACCAGCAAACATTCTTTTAGACAGGAACTATGTGAGCAAGATCAGCGATGTTGGTTTGGCACGACTAGTTCCTCCTTCAGTGGCTGATCAAACCACACAATATCGTTTAACTGGTGCAGCTGGAACATTTTGTTATATCGATCCTGAGTATCAACAAACAGGATTGTTGGGTGTGAAATCAGACGTATATTCATTAGGAGTCGTGTTGCTACAAATCATTACAGGAAAATCTCCAATGGGGTTGTCACATTTGGTTGAGAAGGCTCTTCTGTCAAATACTTTGAGTGAGGTGCTTGATCCAAGTGTTACAGATTGGCCAATAGAAGCGACTTCATCATTCGCTAAGTTGGCCTTAAAGTGCTGCGAGTTGAGAAAACGTGATAGACCAGACCTTGGTAATGTTGTCTTGCCGGAGTTAAATAGAATATCGAGGTTGTGGGACGATGAAAACGTATATCCCCTTAGAAATTATCACATGGCTTAA 2010 0.3856 MFSNTPTPVVIRRDSTVIAVSGGRHSNGAVKWAVEHLLKKNSSCILLHVRTRTMLTPDNNNNNNNTNTNDPPKGARPPTEEELHQFFLPFRGFCARKGISTKELVLHDLDVTSALIAFVDDNCISTLVVGAATSSWGSILRRFNKDDVSATLAKSLPDTCSLYVISKGKVQHIRPSGHHAHHYHHQHVEATPAKSIKDIVNFLESDPLEQPHKDLNINQIAFEDIERKLIKDAVKHQSNNKLWDYLHEETNSPKGPIEYPPSQNSSANNTPGNSDSTGQSLGPSLTNRLNENQKIVLNAHHSRTNSHHSIRNISHHSRTNSHHYGNNSSIKDQVNFDMQMRKLKLELQKTAEMYGMACKEAVLATQKAMEIEKYRQEKERNIVEAKLAQSKMTMESTEMSKHLVKMDSLKRKEVELKAKSEEEETIKALQETLYNNIPYRRYTIEDIDAATNKFDNALKIGEGGYGPVFKGLLDHTTVAIKAVRPDLAYAEKQFQQETKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVADQTTQYRLTGAAGTFCYIDPEYQQTGLLGVKSDVYSLGVVLLQIITGKSPMGLSHLVEKALLSNTLSEVLDPSVTDWPIEATSSFAKLALKCCELRKRDRPDLGNVVLPELNRISRLWDDENVYPLRNYHMA 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03017 669 MobiDBLite consensus disorder prediction 256 286 - -
Vimu11g03017 669 Pfam Protein kinase domain 503 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03017 669 SMART serkin_6 454 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03017 669 ProSiteProfiles Protein kinase domain profile. 348 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03017 669 MobiDBLite consensus disorder prediction 55 73 - -
Vimu11g03017 669 Gene3D Transferase(Phosphotransferase) domain 1 504 647 - -
Vimu11g03017 669 Gene3D HUPs 14 166 IPR014729 -
Vimu11g03017 669 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 17 157 - -
Vimu11g03017 669 Gene3D Phosphorylase Kinase; domain 1 411 503 - -
Vimu11g03017 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 503 515 IPR008271 GO:0004672|GO:0006468
Vimu11g03017 669 SUPERFAMILY Protein kinase-like (PK-like) 432 644 IPR011009 -
Vimu11g03017 669 CDD STK_N 15 168 - -
Vimu11g03017 669 MobiDBLite consensus disorder prediction 55 79 - -
Vimu11g03017 669 MobiDBLite consensus disorder prediction 248 286 - -
Vimu11g03017 669 PANTHER OS02G0152300 PROTEIN 498 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03017 Vimu-Chr11 49809439 49812720 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03017 494 661 Receptor kinase-like Gene Family AT1G78940 67.059 3.40e-73 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vimu11g03017 Pkinase 5e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03017 - - var:108320196 847.425