Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02997 ATGGGGAATCAGAAGCAGAAGTGGACGCAGGACGAGGAAGACGCGCTCATAGCCGGAGTTGAAAAGCACGGTCCCGGAAAGTGGAAAAACATTCTCAAAGATCCCCAATTTGCCCCTTTTCTCACTTCCCGTTCCAACATCGACCTTAAGGACAAATGGCGGAATTTGAGCGTCAGTAACGGTTCTCAAGGCTCCAAAGACAAGCCTAGGGTTCCCAAGCTCAAGGCTCTTCCTCCTCCTCCTTCTTCTACCACCTCCTCCTCTACCACCGCCACACCTCAAAACGCGGCTTCTGCTCCACAAAACGTACCGTCTGATGTCACTGTCCCTGATTCTTCTCTGAATGACCAAGATGTCAAAAACCCTCCGAGGTATAATGCAATGGTTTTTGAAGCTCTATCAGCACTAAAAGATAATAATGGATCTGACCTAAATGCCATTGTTAGTTTCATCGAGGTACAAAATTGTTACAAAATAAAAAAGGATATCTCCTCGGGAACAAAATCACCCGCACCAAAACCAAAGGATGTCCGGCCAACACCATCACAACCTGCACCCCAACCACAATGGCAGTCCTCGGTTTCTGTCTTTACAGCATCTAATGAGACAATAAAGGATGCTGCAGATACTGCAGCCTACAGAATTGCGGATGCTGAAAGTAAGTCATATCTGGCTGCGGAAGCAGTAAAGGAGGCAGAGAAAATATCATTGCTGGTTGAACATAGTGATTCAATGTTGGAGCTAGCAAAAGACATATATGAACAATGTTCTCGTGGTGAAATTATCCTTTTGGCTTAA 798 0.4561 MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGSQGSKDKPRVPKLKALPPPPSSTTSSSTTATPQNAASAPQNVPSDVTVPDSSLNDQDVKNPPRYNAMVFEALSALKDNNGSDLNAIVSFIEVQNCYKIKKDISSGTKSPAPKPKDVRPTPSQPAPQPQWQSSVSVFTASNETIKDAADTAAYRIADAESKSYLAAEAVKEAEKISLLVEHSDSMLELAKDIYEQCSRGEIILLA 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02997 265 MobiDBLite consensus disorder prediction 80 120 - -
Vimu11g02997 265 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Vimu11g02997 265 FunFam Telomere repeat-binding factor 1 8 87 - -
Vimu11g02997 265 PANTHER SINGLE MYB HISTONE 4 152 264 IPR044597 GO:0003691
Vimu11g02997 265 SUPERFAMILY "Winged helix" DNA-binding domain 121 157 IPR036390 -
Vimu11g02997 265 Gene3D - 2 58 - -
Vimu11g02997 265 FunFam Telomere repeat-binding factor 1 2 58 - -
Vimu11g02997 265 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Vimu11g02997 265 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Vimu11g02997 265 MobiDBLite consensus disorder prediction 54 122 - -
Vimu11g02997 265 Pfam linker histone H1 and H5 family 123 155 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vimu11g02997 265 MobiDBLite consensus disorder prediction 163 191 - -
Vimu11g02997 265 Gene3D - 118 174 IPR036388 -
Vimu11g02997 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 62 IPR017930 -
Vimu11g02997 265 SMART sant 4 59 IPR001005 -
Vimu11g02997 265 CDD SANT_TRF 6 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02997 Vimu-Chr11 49561409 49564173 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02997 1 264 Single Myb Histone (SMH) Gene Family AT1G17520 42.053 7.36e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu11g02997 Myb_DNA-binding 1.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02997 K09422 - gmx:778177 382.874