Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02995 ATGGGGAATCAGAAGCAGAAATGGACGCAAGACGAAGAAGACGCGCTCATAGCCGGAGTTGAAAAGCACGGTCCCGGAAAGTGGAAGAACATTCTCAAAGATCCTCAATTCGCTCCTTTCCTCACTTCTCGTTCCAACATCGATCTCAAGGACAAATGGCGGAATTTGAGCGTCAGTAACTGTTCTCAAGGCTCCAAAGACAAACCTAGGGTTCCCAAGCTCAAGGCTCCTCCTCCACCTTCTACTGCTGCCACCTCCTCCACGGCCACCGCCCCTCAAAATGCCCCTCCTGCTCTTCAAAACGCAAGGACTGAGGTCGCTGCCCTTGATTCTTCTCCGAATGACCAAGATGTCAAAAACCCTCCGAGGTATAATGCAATGGTTTTTGAAGCTCTATCAGCACTAAAAGATAATAATGGATCTGACCTAAATGCCATTGTTAGTTTCATCGAGGTACAAAATTGTTACAAAATAAAAAAGGATGTCGCCTCCGGGGCAAAATCACCTCCACCAAAACCAAAGGATGTCAGGCCACGGCAACTACAACCACAACCAGAACGGCAATCCCCGGCATCTGTCATTACGGCATCTAATGAGACAATAAAGGAAGCTGCTGATACTGCAGCCTATAGAGTTGCTGATGCTGAAAGTAAATCATATCTGGCTGCGGAAGCAGTAAAGGAGGCAGAAAAAATATCATTGTTGGTTGAACATAGTGATTCAATGTTGCAGCTAGCAAAAGATATATATGAACAATGTTCCCGAGGTGAAATTATCATCTTGGCTTAA 789 0.4575 MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNCSQGSKDKPRVPKLKAPPPPSTAATSSTATAPQNAPPALQNARTEVAALDSSPNDQDVKNPPRYNAMVFEALSALKDNNGSDLNAIVSFIEVQNCYKIKKDVASGAKSPPPKPKDVRPRQLQPQPERQSPASVITASNETIKEAADTAAYRVADAESKSYLAAEAVKEAEKISLLVEHSDSMLQLAKDIYEQCSRGEIIILA 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02995 262 FunFam Telomere repeat-binding factor 1 2 58 - -
Vimu11g02995 262 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
Vimu11g02995 262 MobiDBLite consensus disorder prediction 58 121 - -
Vimu11g02995 262 Pfam linker histone H1 and H5 family 122 154 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vimu11g02995 262 FunFam Telomere repeat-binding factor 1 8 86 - -
Vimu11g02995 262 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Vimu11g02995 262 PANTHER SINGLE MYB HISTONE 4 151 261 IPR044597 GO:0003691
Vimu11g02995 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Vimu11g02995 262 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Vimu11g02995 262 SUPERFAMILY "Winged helix" DNA-binding domain 120 156 IPR036390 -
Vimu11g02995 262 MobiDBLite consensus disorder prediction 80 119 - -
Vimu11g02995 262 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 120 224 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vimu11g02995 262 SMART sant 4 59 IPR001005 -
Vimu11g02995 262 Gene3D - 2 58 - -
Vimu11g02995 262 Gene3D - 117 174 IPR036388 -
Vimu11g02995 262 MobiDBLite consensus disorder prediction 161 193 - -
Vimu11g02995 262 CDD SANT_TRF 6 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02995 Vimu-Chr11 49557649 49560229 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02995 1 261 Single Myb Histone (SMH) Gene Family AT1G17520 41.176 1.10e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu11g02995 Myb_DNA-binding 1.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02995 K09422 - gmx:778177 373.244