Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02993 ATGGCAGGTTTGGCTCCAGAAGGAACACAATTTGATGGTCGCCAATATGATGCTAAGATGACTGAATTGCTTTCCACTGATGGGCAAGAATTCTTTACCTCTTATGATGAAGTCTACGACAGCTTTGATGCAATGGGATTACAAGAAAATCTTCTGCGAGGCATATATGCTTATGGTATCTACTGGCAGATTGACCCTCTTAGTCTAAGTTTTGAGAGGCCTTCTGCAATCCAGCAAAGAGGAATTGTTCCTTTCTGCAAGGGTCTGGATGTGATTCAGCAGGCTCAATCTGGAACAGGAAAGACAGCAACATTCTGTTCTGGAATTTTGCAGCAGCTTGATTATGGATTGGTTCAGTGCCAGGCTTTGGTTTTGGCACCAACAAGGGAGCTAGCACAGCAGATTGAAAAAGTTATGCGAGCTCTTGGCGATTACCTGGGTGTTAAAGTTCATGCATGTGTTGGTGGGACAAGTGTCCGTGAGGATCAGCGCATTCTCCAAGCTGGTGTTCACACTGTTGTTGGCACTCCTGGCCGTGTGTTTGACATGCTGCGGAGGCAGTCTCTCCGCCCAGATTACATAAAGATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAGATCTATGACATCTTCCAGCTGCTGCCATCCAAAATTCAGGTTGGGGTTTTCTCTGCTACAATGCCACCAGAAGCCCTTGAGATTACAAGGAAGTTCATGAATAAGCCAGTGAGAATCTTGGTAAAGCGCGATGAATTGACCCTGGAAGGTATCAAACAGTTTTATGTCAATGTTGACAAGGAAGAGTGGAAGCTAGAGACATTATGCGACCTTTATGAGACTCTGGCTATCACCCAAAGTGTCATTTTTGTGAACACCAGGCGCAAGGTCGACTGGCTCACTGATAAGATGCGAAGCAATGACCACACGGTCTCTGCCACCCATGGTGACATGGACCAAAACACGCGTGACATCATCATGCGTGAATTCCGGTCTGGCTCATCTCGAGTTCTCATTACCACCGACCTTCTGGCCCGTGGTATAGATGTGCAACAAGTGTCTCTGGTCATAAACTATGATCTGCCAACCCAGCCTGAAAACTATCTCCACCGCATAGGCCGTAGTGGCCGGTTTGGAAGAAAAGGAGTTGCTATAAACTTTGTCACAGCTGATGATTCCAGAATGCTGTCTGATATTCAGAAGTTCTACAATGTGACTGTAGAGGAGCTGCCATCAAATGTTGCTGATTTGCTCTGA 1275 0.4604 MAGLAPEGTQFDGRQYDAKMTELLSTDGQEFFTSYDEVYDSFDAMGLQENLLRGIYAYGIYWQIDPLSLSFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHTVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTADDSRMLSDIQKFYNVTVEELPSNVADLL 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02993 424 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 198 206 IPR000629 -
Vimu11g02993 424 SMART ultradead3 70 267 IPR014001 -
Vimu11g02993 424 CDD SF2_C_DEAD 264 394 - -
Vimu11g02993 424 FunFam Eukaryotic initiation factor 4A-II 28 258 - -
Vimu11g02993 424 CDD DEADc_EIF4A 44 253 - -
Vimu11g02993 424 Pfam DEAD/DEAH box helicase 76 237 IPR011545 GO:0003676|GO:0005524
Vimu11g02993 424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 120 405 IPR027417 -
Vimu11g02993 424 Pfam Helicase conserved C-terminal domain 277 385 IPR001650 -
Vimu11g02993 424 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 39 408 - -
Vimu11g02993 424 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 263 424 IPR001650 -
Vimu11g02993 424 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 82 252 IPR014001 -
Vimu11g02993 424 Gene3D - 260 424 IPR027417 -
Vimu11g02993 424 SMART helicmild6 304 385 IPR001650 -
Vimu11g02993 424 Gene3D - 30 259 IPR027417 -
Vimu11g02993 424 FunFam Eukaryotic initiation factor 4A-III 259 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02993 Vimu-Chr11 49549018 49551285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02993 1 424 Eukaryotic Initiation Factors Gene Family AT1G72730 86.824 0.0 761
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02993 K03257 - gmx:100817948 803.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02993 11 49549018 49551285 Vimu11g02993 11 49549018 49551285 ECH
Vimu4g00358 4 2562860 2565651 Vimu11g02993 11 49549018 49551285 PCT