Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02992 ATGGAAACTCGAGTTGGGAACAAGTTCCGTCTCGGTCGGAAAATTGGCAGCGGATCCTTCGGAGAGATCTATCTCGGAACTAATCTTCAGACGAATGAAGAGGTTGCGATTAAGCTTGTGAGTTTTTGGACCTACGACGAAAGTGTGAAAACCAAGCACCCTCAACTGTTGTATGAATCGAAGCTGTATAAAATTCTGCAAGGAGGAAATGGGATTCCAAATGTGAAATGGTACGGTGTTGAAGGAGAGTACAACGTGCTCGTGATGGATTTACTTGGCCCTAGTCTTGAGGATTTATTCAACTTCTGTAGTCGGAAATTGTCTCTCAAAACTGTTCTTATGCTTGCTGATCAAATGATAAATCGAGTTGAATTTGTTCATTCCAAATCATTTTTACATCGCGACATCAAACCAGACAACTTCCTTATGGGTTTAGGAAGGCGTGCAAATCAAGTGTATATCATTGACTTTGGCCTTGCTAAGAAATATAGAGACACCTCTACACATCAGCATATCCCATACAGAGAGAACAAGAATTTGACAGGAACTGCTAGGTATGCTAGTATGAATACTCATCTGGGAATTGAGCAAAGCCGAAGGGATGATTTAGAGTCACTTGGATATGTTCTTATGTACTTTTTAAGAGGAAGTCTGCCTTGGCAGGGATTGAAAGCTGGTACTAAGAAGCAGAAGTACGAGAAGATTAGTGAGAAGAAAGTTTCTACTTCTATTGAGTCTCTCTGTCGTGGCTATCCCTCAGAATTTGCTTCATACTTCCATTACTGCCGGTCACTGAGGTTTGATGACAAACCAGATTATTCTTATTTGAAAAGACTTCTGCGTGACCTTTTCATTCGTGAAGGGTTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAATCTCAAAGTGCCACTGCCCCTGCCCGTGCTATTGGTCCTGCTGCTGGACCAAGTTCAGGCGTGCCACCACTAGCTGCAAATGCTGATGGACAGTTAGGTGGAGAGGATGGTAGGCATAATAATTGGTCTTCATCAGATCCTACTCGTAGGAGAAACCCTGTACCTTTTGCTAATGATGGCGTGTTATCGAGACAAAAGGGCCCAGTTACATATGACTCAACCCAATCTAAAGATGTTATGGTGCGTGTATTCATTTGTGACATGGCTGTTACTTGTGCTTTGTCAAGCTCTAATTTTTTCCGGCCAAGTGGATCTGCAAGGCGAGGTGCTGTCTCAGGCAGCCGAGAATCCCGTGATGTAGTTGTTGGCAGTGAGACCGAGGCTTCTCGTCCTCTAACTCTGGATTCAAGTCAGGGAGCACTTCGTAAAATGTCTGTTCCTGGTGCTCAGAGAAGTTCAGCAATCACGTCTTCTGAGCACAACCGTACATCCTCTGGCAGAAACACATCGAATATAAAGAATTTGGAGACAACTCTTAGGGGTATTGAGAGCCTACATTTCAATGAAGAGAGGGCTTATACTCTTTTTGATGAACCGAGGAGTGGAATGTTGTCTATGCATTATGTTGAAGAAAAGCTGCAAACTAGTAGGGAAGAATTATGA 1575 0.4292 METRVGNKFRLGRKIGSGSFGEIYLGTNLQTNEEVAIKLVSFWTYDESVKTKHPQLLYESKLYKILQGGNGIPNVKWYGVEGEYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYSYLKRLLRDLFIREGFQFDYVFDWTILKYQQSQSATAPARAIGPAAGPSSGVPPLAANADGQLGGEDGRHNNWSSSDPTRRRNPVPFANDGVLSRQKGPVTYDSTQSKDVMVRVFICDMAVTCALSSSNFFRPSGSARRGAVSGSRESRDVVVGSETEASRPLTLDSSQGALRKMSVPGAQRSSAITSSEHNRTSSGRNTSNIKNLETTLRGIESLHFNEERAYTLFDEPRSGMLSMHYVEEKLQTSREEL 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02992 524 MobiDBLite consensus disorder prediction 406 434 - -
Vimu11g02992 524 SUPERFAMILY Protein kinase-like (PK-like) 5 297 IPR011009 -
Vimu11g02992 524 Pfam Protein kinase domain 10 234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g02992 524 MobiDBLite consensus disorder prediction 453 474 - -
Vimu11g02992 524 FunFam Casein kinase I isoform delta-like 1 315 - -
Vimu11g02992 524 PANTHER CASEIN KINASE-RELATED 8 436 - -
Vimu11g02992 524 MobiDBLite consensus disorder prediction 341 355 - -
Vimu11g02992 524 Gene3D Transferase(Phosphotransferase) domain 1 1 316 - -
Vimu11g02992 524 MobiDBLite consensus disorder prediction 450 474 - -
Vimu11g02992 524 CDD STKc_CK1_delta_epsilon 8 289 - -
Vimu11g02992 524 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Vimu11g02992 524 MobiDBLite consensus disorder prediction 313 375 - -
Vimu11g02992 524 FunFam Putative Casein kinase I 1 92 - -
Vimu11g02992 524 SMART serkin_6 9 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g02992 524 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vimu11g02992 524 ProSiteProfiles Protein kinase domain profile. 9 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02992 Vimu-Chr11 49539934 49544069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02992 11 288 MAP Kinase Kinase Kinase AT5G50180 26.990 3.50e-14 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vimu11g02992 Pkinase 8.4e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02992 K02218 - gmx:100787808 835.869