Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02980 ATGGATAATACTTTTAAAAGGGAAAATGGAGTTGAAAATGAAGATGATCAAAGTGTATCTGATTCCAAAGAAAAAGTCCACAGCAAACGACAGCGTTTTGATGCAGTGAGTGTTGCCATTGATGAGAGGTCAACTGCAAGCAACAACAACAGCTTCAAACTCAAACTCACTTCAAAGTTCACTTGGCGTTACCACCTCGTCCTTTGCAAAAAACGGTTCTTTTCTCAAATGGGTGGTTCTGGGAGATGGCTTAAGTCGCTCATTTCTCTCAGGAAGCCCTCCGCAACTGATCAAGAGAAGGGTGGTGACAAGAGTAAGAGAAAGTGGAAGTTATGGAGGGGCACTTCAGAAGGGTTTGGGATTGGATCATCCATGCAGAAGGGGCAGAGTGGTGGTGGGTCCTTTGTGGTGGATGATGGGGCATTTGCTGCTGCTTTGGCTGCTGTGGTGAGAACTCCACTCAAAGACTTCATGGTCATCAAGCAGGAATGGGCTGCCATTCGAATACAGGCAGTGTTTCGTGGTTTCTTGGCAAGACGAGCTTTGAGGGCCCTGAGAGCAGTGGTGAGGTTGCAAGCTATATTTCGTGGTTGGCAAGTGAGGAAGCAAGCAGCTGTTACTCTAAGATGCATGCAGGCTCTTGTGCGAGTTCAAGCACGTGTCAAGGCAAGGAATGTGGGGAAAGCCGTCAGTGAGCCCTGCAATGAAGCTGACCCTGTTCAGCAAGCTGAGCAAGGATGGTGTAACATTCCAGGAACCGCGGAAGAAGTTAAGGCAAAATTACAGATGAGGCTGGAAGGAGCAATTAAGAGGGATAGGACAAAGGCATACTCTCAGTCTAAACAGAAATCAACAGTGAGTGCTAGTCCAAACTCAAAAGGTGCTAGGGCAGTGATTCCTCCTCAAAAGCACCGCAGTTTAGATAGTAAGAGCTCAGGATGGGGCATGTTAGATCGCTGGATGGCTGCAAAACCATGGGAGAGCAGGTCGATGGTAGATATGTATTTGGACTCATCTGACATGACTCCAGCAGTTACTAGTAAAAGTGATCATTTTGTTCTTCCCTTGAATTCTGATCAACAAATTGGCTCAGTCAAAGCAAGAAGGAACGGTGTGACAACCAGGATTTCATCTAAGTCACTTACGACTAGTCAATCAACTCCATCATCTTCATCCATAAGCTCTGAATGCATGTATGATGATAGCCCTTTGTCAACTTCATGCACATCTGAATCACCACCTGTGCCATCTACCAACAATGTTATAGTGGACACAACAGAGGAAGGAAATGTTTGTAAACCAAGCTACATGAATCTGACAGCATCAACCAAAGCTAAACTGAAACCCTATAGGTGTTTTTCTCAGAATTCTAAGAGAATTTTTATGGATGATTGTGTGTCACTTAGCGGAGTTACTAGAAGCAGTTCTGGTTCCTATCCTTCTGCTAATATGTGGAAGAATGTCTATGCAACACCTTTAAGGACACGTTATCAAAAGCAATATACAATGGAAGATAAGTAG 1521 0.4458 MDNTFKRENGVENEDDQSVSDSKEKVHSKRQRFDAVSVAIDERSTASNNNSFKLKLTSKFTWRYHLVLCKKRFFSQMGGSGRWLKSLISLRKPSATDQEKGGDKSKRKWKLWRGTSEGFGIGSSMQKGQSGGGSFVVDDGAFAAALAAVVRTPLKDFMVIKQEWAAIRIQAVFRGFLARRALRALRAVVRLQAIFRGWQVRKQAAVTLRCMQALVRVQARVKARNVGKAVSEPCNEADPVQQAEQGWCNIPGTAEEVKAKLQMRLEGAIKRDRTKAYSQSKQKSTVSASPNSKGARAVIPPQKHRSLDSKSSGWGMLDRWMAAKPWESRSMVDMYLDSSDMTPAVTSKSDHFVLPLNSDQQIGSVKARRNGVTTRISSKSLTTSQSTPSSSSISSECMYDDSPLSTSCTSESPPVPSTNNVIVDTTEEGNVCKPSYMNLTASTKAKLKPYRCFSQNSKRIFMDDCVSLSGVTRSSSGSYPSANMWKNVYATPLRTRYQKQYTMEDK 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02980 506 ProSiteProfiles IQ motif profile. 162 190 IPR000048 GO:0005515
Vimu11g02980 506 SMART iq_5 184 205 IPR000048 GO:0005515
Vimu11g02980 506 SMART iq_5 161 183 IPR000048 GO:0005515
Vimu11g02980 506 MobiDBLite consensus disorder prediction 367 398 - -
Vimu11g02980 506 Gene3D - 160 213 - -
Vimu11g02980 506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 204 IPR027417 -
Vimu11g02980 506 Pfam IQ calmodulin-binding motif 186 203 IPR000048 GO:0005515
Vimu11g02980 506 Pfam IQ calmodulin-binding motif 164 183 IPR000048 GO:0005515
Vimu11g02980 506 MobiDBLite consensus disorder prediction 272 311 - -
Vimu11g02980 506 ProSiteProfiles IQ motif profile. 186 213 IPR000048 GO:0005515
Vimu11g02980 506 PANTHER IQ-DOMAIN 5-RELATED 77 481 - -
Vimu11g02980 506 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02980 Vimu-Chr11 49452139 49456668 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02980 77 489 IQD Protein Family AT1G72670 42.857 5.21e-87 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02980 - - vun:114166337 762.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00351 4 2508084 2510474 Vimu11g02980 11 49452139 49456668 PCT