Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02979 ATGGGACACCACTCTTGCTGCAACAAGCAGAAGGTCAAAAGAGGGCTTTGGTCACCTGAAGAGGATGAGAAACTCATCAACTACATCACAACTTACGGACATGGCTGCTGGAGTTCTGTCCCAAAACTTGCAGGCCTGCAAAGATGTGGAAAGAGTTGCAGATTAAGATGGATAAATTATCTGAGACCTGATTTGAAACGTGGAAGCTTCTCTCCTCAAGAAGCAGCTCTTATTATTGAACTCCACAGCATTTTAGGGAACAGGTGGGCTCAGATAGCCAAGCACCTACCTGGAAGAACAGATAATGAGGTGAAAAACTTTTGGAATTCAAGCATAAAGAAGAAACTCCTTTCTCATGATGCTATTCCTCCTTTAGCCACATTTTCTGATTTTCATCACAGCCCCATCACCAATATTTCTTCCATGGATACTTTCTTCCCTTTTACTGCAAACCCTAATCTCATCTTAAACTTCCACCATTTCACAGACCAGCTCTACCTTCCCACCACACCATCCCCATTCCTACAAGCTTTTGATCATAACAATGATGTCAAGTTAGCTTTCAACACTTACAATGCCAATTTCCTTCATATTCAGAATCCAGCATTACCAGAAACAACAGCACTACCATCTTCCCATCCAAATGATGAAAATCAAATCACCAAAAGTGACACCACCTCGGACTATGTTCTTGACAAATTCATCAACCCAACAGCATTGCAGCAACATGAATATCACTTGGTAGAAGAACCCCTTGTGCCAATACTCAGTGAGAACATTGAAGATAATAATTATGTTTGCAGCAGCATCCCATTCTCATCCACCCCCCAAGAACAACACGAGACTACAGCAAAATTTCAGTGTTATCCACAAGATCTAGCTGTGGCAGTGAACCAATTAGAGTACATTGATGCCTTCATGTCATTGTTGCCATCTTCAACAACTTCATTATCAGTTTCAAGCACCCAAAAAGTCCCAAACCCTATTATTCCCTCAGGATGGGAGCCTTGA 1011 0.4184 MGHHSCCNKQKVKRGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLLSHDAIPPLATFSDFHHSPITNISSMDTFFPFTANPNLILNFHHFTDQLYLPTTPSPFLQAFDHNNDVKLAFNTYNANFLHIQNPALPETTALPSSHPNDENQITKSDTTSDYVLDKFINPTALQQHEYHLVEEPLVPILSENIEDNNYVCSSIPFSSTPQEQHETTAKFQCYPQDLAVAVNQLEYIDAFMSLLPSSTTSLSVSSTQKVPNPIIPSGWEP 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02979 336 SMART sant 66 114 IPR001005 -
Vimu11g02979 336 SMART sant 13 63 IPR001005 -
Vimu11g02979 336 Gene3D - 11 67 - -
Vimu11g02979 336 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vimu11g02979 336 PANTHER MYB DOMAIN PROTEIN 55 1 234 - -
Vimu11g02979 336 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vimu11g02979 336 FunFam Myb transcription factor 69 116 - -
Vimu11g02979 336 CDD SANT 17 61 IPR001005 -
Vimu11g02979 336 FunFam MYB transcription factor 6 66 - -
Vimu11g02979 336 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vimu11g02979 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vimu11g02979 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vimu11g02979 336 CDD SANT 69 109 IPR001005 -
Vimu11g02979 336 Gene3D - 69 116 - -
Vimu11g02979 336 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vimu11g02979 336 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02979 Vimu-Chr11 49439600 49441191 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02979 1 151 MYB Transcription Factor Family AT3G13890 80.132 1.67e-82 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu11g02979 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02979 K09422 - gmx:100785147 513.072