Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02970 ATGGAGATGAAGGGTTTTGTGTTCAACCAACATCAGCAGCAGCAGCAGCAAGTAGTGGAGGAGAACATGTCAAATTTGACTTCTGCATCTGGTGAAGCCAGTGCTTCCTCAGGCAACAGAACTGAAATTGGAACCAGTTACCCTCAGCAATACTTGGCTCCACCACCAACTCAGACTCAGCCACCAAAGAAAAAGAGAAACCTTCCTGGTAACCCAGACCCTGATGCTGAAGTTATAGCCTTGTCCCCCAAGAGTCTTCTGGCCACAAATAGGTTCATTTGTGAGATCTGCAACAAAGGATTTCAAAGAGACCAGAACCTGCAACTTCACAGAAGAGGGCACAATTTGCCGTGGAAGCTGAAGCAGAGAACAAGCAAAGAGGTGAGGAAGAAGGTGTATGTGTGTCCAGAGGCAAATTGTGTGCATCATGACCCATCAAGGGCTCTTGGGGACCTGACTGGGATCAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCCAAGAAATATGCAGTTCAATCAGATTGGAAAGCCCATTCCAAGACCTGTGGCACAAGGGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCTTTCTGTGATGCATTAGCAGAAGAGAGTGCAAGAGCAATCACTGGCACAGGCAACAACAACCAACTTCTTCCCCCACAACCTTCTTCCTCTCATCAGAACCACCACAACAACATGACCCTTCAAACCCAATTCAACCCTCAAAATCTCCATGCTTTCTCATTGAAAAAAGAGCAGCAAAGTTTCAATCTTAGGCCAGAAATGCCCCCTTGGCTGGGCCCACCAACAACAGTTGATAATCTCTCCTCATCCCCATCCATAATGTTCTCTCCCTCTCCACACCAAGAAAACCCTAACCCTAGTCTTGGTCCCACTCTTGCTGCCTACCAAACAGTCCCTAACCCTTCCCCACACATGTCAGCCACAGCATTGCTGCAGAAAGCAGCTCAGATGGGTGCAACCATGAGCAGAAGTGGTTCCTCACCAGCCATGGCAAGGGCCCACCATCAGGTTCACATGACTTCTTCAGCAGATTCTGCCACTGCTCATTTTGGCTTGAACTTGTCCTCACGTGATCAAGACAACACCACCACCACTTCAACAACACCAACCACTGTTACGACTAACACTCCTGCAGTGTTTAGCCATGGCTTGTTATCATCATCATCATCATCATCACCTTTGGGGAATAAAGCTGCTGCTGCTACTGTGTCTTCTGCTCCATCCCTTCTTCATGATGTTATACACTCTTTCTCTTCTCCCTCTGCCTTCCAAGGAACCCCTTTTGAGGATGCATTTGGTGGCATTCAGAATTCAAAAAAACTAGATGACGATACCTTGTATCTGCATGATACCTTCTCAAAAGCAAGTGGTGCAGCAGGAAATGAAGGGTTGACCAGAGATTTCTTGGGTCTCAGGCCACTCTCTCATAATGATATTCTCACCATTGCTGGCATTGGAAACTGCATTCATGATCAGCAAAACCAATCTCAAAAGCCATGGCAAGGTTAG 1590 0.4717 MEMKGFVFNQHQQQQQQVVEENMSNLTSASGEASASSGNRTEIGTSYPQQYLAPPPTQTQPPKKKRNLPGNPDPDAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPEANCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAITGTGNNNQLLPPQPSSSHQNHHNNMTLQTQFNPQNLHAFSLKKEQQSFNLRPEMPPWLGPPTTVDNLSSSPSIMFSPSPHQENPNPSLGPTLAAYQTVPNPSPHMSATALLQKAAQMGATMSRSGSSPAMARAHHQVHMTSSADSATAHFGLNLSSRDQDNTTTTSTTPTTVTTNTPAVFSHGLLSSSSSSSPLGNKAAAATVSSAPSLLHDVIHSFSSPSAFQGTPFEDAFGGIQNSKKLDDDTLYLHDTFSKASGAAGNEGLTRDFLGLRPLSHNDILTIAGIGNCIHDQQNQSQKPWQG 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02970 529 MobiDBLite consensus disorder prediction 380 404 - -
Vimu11g02970 529 SUPERFAMILY beta-beta-alpha zinc fingers 91 188 IPR036236 -
Vimu11g02970 529 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 34 507 IPR031140 -
Vimu11g02970 529 SMART c2h2final6 168 188 IPR013087 -
Vimu11g02970 529 SMART c2h2final6 92 114 IPR013087 -
Vimu11g02970 529 SMART c2h2final6 133 163 IPR013087 -
Vimu11g02970 529 MobiDBLite consensus disorder prediction 229 250 - -
Vimu11g02970 529 MobiDBLite consensus disorder prediction 1 76 - -
Vimu11g02970 529 FunFam protein indeterminate-domain 5, chloroplastic-like 146 225 - -
Vimu11g02970 529 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Vimu11g02970 529 FunFam protein indeterminate-domain 12-like 71 139 - -
Vimu11g02970 529 Pfam Zinc-finger double-stranded RNA-binding 92 114 IPR022755 -
Vimu11g02970 529 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Vimu11g02970 529 MobiDBLite consensus disorder prediction 7 53 - -
Vimu11g02970 529 Gene3D Classic Zinc Finger 143 225 - -
Vimu11g02970 529 Gene3D Classic Zinc Finger 73 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02970 Vimu-Chr11 49366315 49369466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02970 23 529 IDZ Gene Family AT3G13810 47.069 4.96e-138 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu11g02970 zf-C2H2_jaz 7.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02970 K25870 - gmx:100808344 782.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00341 4 2455244 2455956 Vimu11g02970 11 49366315 49369466 PCT