Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02968 ATGCAGCCGAAATCTCACACCCCTTTTTTTCTTCCACCCCAAAAGGCCATGAACAACAATAACAACAGCACCATTACAACCACCAACACCAAAACCAACAACAACAGAATCTCCAATACAAGAAATGGCAACAGCACCACTCAGGCTTGCGCTGCATGCAAGTACCAACGTAGAAAGTGTGCACCCGATTGCATTCTCGCACCCTATTTCCCTCACGATCGACAGCGCCAGTTTCTCAACGCTCACAAGTTGTTCGGAGTAAGCAACATCACCAAAATCATTAAGGTTGTCAGCCCTCGCGACAAGGACCAAGCCATGCGCACCATAATCTACCAATCCGACATGCGTGCCTCCGACCCTGTCGGCGGCTGTTACAGGTACATTGTCGACCTCCAGACTCAGATTGAGTACTGCCGAGCCGAGCTCGACCTCGTCCTTCAACAACTCGCCATGTTTCGAGCTCAGGCTCAGCACCAGTATCAGCACCAGCACGGTATCTATGCTCCCAACAGCGTTAACGTCACCGTTAATGGAGATGGTGAGGTTTTGAACGCCGACCCGATGGGGCTGTACGGCCAGCAACAGTATCAGTGTCTGCAGCCACACCAACAGGAGCAGTATGTTATGATGCATGAAAATGGGAGCCAGAACTTCAACGGCGCCACCCCTTTGCAGGATCAGATGAACACATGGGCTGTGCAGAACACTGCTGTGTCGCTTTCTTCGTTGTCGTTGCAAGGACAGAGTAGTAATGTTAGCGATGAATACGATCACAAGGCCGTCATTGACATTGATTCTGATGAGAGAAGTGAGTTAGGGTTCGAGTCTGAAGAATTAGTCCATCGCAGTGATGAATCGGTGTTGTTTAAGATAGATGATGCAGTAATAAAAGCTGAGGGTGACTGCATGCAACAAGGTCAAGACCATGATCTGAAAGGTGCAGCAACATCGTTTAGCCTCACAAATTGTACTTGCTGA 978 0.4918 MQPKSHTPFFLPPQKAMNNNNNSTITTTNTKTNNNRISNTRNGNSTTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKVVSPRDKDQAMRTIIYQSDMRASDPVGGCYRYIVDLQTQIEYCRAELDLVLQQLAMFRAQAQHQYQHQHGIYAPNSVNVTVNGDGEVLNADPMGLYGQQQYQCLQPHQQEQYVMMHENGSQNFNGATPLQDQMNTWAVQNTAVSLSSLSLQGQSSNVSDEYDHKAVIDIDSDERSELGFESEELVHRSDESVLFKIDDAVIKAEGDCMQQGQDHDLKGAATSFSLTNCTC 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02968 325 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 46 203 - -
Vimu11g02968 325 Pfam Lateral organ boundaries (LOB) domain 49 144 IPR004883 -
Vimu11g02968 325 MobiDBLite consensus disorder prediction 1 41 - -
Vimu11g02968 325 MobiDBLite consensus disorder prediction 12 41 - -
Vimu11g02968 325 ProSiteProfiles LOB domain profile. 48 149 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02968 Vimu-Chr11 49349128 49350519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02968 48 163 AS2 family AT3G13850 75.862 1.42e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu11g02968 LOB 7.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02968 - - vum:124830493 589.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00337 4 2429790 2431048 Vimu11g02968 11 49349128 49350519 PCT