Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02963 ATGTCTTGCAGCTACTTAGCTCCTGAATATGCAATGACTGGCCATCTTCTGGTCAAGAGTGATGTTTACAGTTATGGAGTTGTACTCCTTGAGCTTCTAACTGGAAGAAAGCCCGTGGATTTGTCACAACCACCAGGTCAAGAAAATCTTGTGACATGGGTTCGTCCACTTCTCACTAGTAAGGAGGGTCTGCAGATGATCATAGATCCAGTTGTAAAGCCTAACATTTCCGTTGATATTGTAGTTAAAGTTGCAGCAATTGCATCCATGTGTGTGCAACCAGAAGTCTCACAACGTCCTTTCATGGGAGAAGTTGTTCAGGCCTTGAAGCTGGTGTGTAGTGAGGTTGAGGAAACAGACTATTTAAGATCAATGAGTTACCAAGAGGGTTTTCTAACTGATGTGGAAGGAAAGTTTTCTGAAGCTTCAGGTGAAAGAGTGGAATTTTCAGAGTATCAAAAAACTCTATCTGGCTATCAATCTGGTGAAGAAAAGGTAGAATTATCAGCATCAGAGTTTCTCGGTGCTTCAGGTCAGGAATTTCAGTCATTCAGGAGGTATTCTCGATCAGGGCCTCTAACCATTGGGAAGAAAAGGCAGTTCTGGCAGAAGTTGAGAAGTTTGTCTGGTGGTAGTACCAGTGAACATGGATTTTCAACAAAACTATGGCCGGGATCCCATTAA 684 0.4269 MSCSYLAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDLSQPPGQENLVTWVRPLLTSKEGLQMIIDPVVKPNISVDIVVKVAAIASMCVQPEVSQRPFMGEVVQALKLVCSEVEETDYLRSMSYQEGFLTDVEGKFSEASGERVEFSEYQKTLSGYQSGEEKVELSASEFLGASGQEFQSFRRYSRSGPLTIGKKRQFWQKLRSLSGGSTSEHGFSTKLWPGSH 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02963 227 ProSiteProfiles Protein kinase domain profile. 1 112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g02963 227 PANTHER OS01G0750732 PROTEIN 5 132 - -
Vimu11g02963 227 Pfam Protein tyrosine and serine/threonine kinase 3 109 IPR001245 GO:0004672|GO:0006468
Vimu11g02963 227 SUPERFAMILY Protein kinase-like (PK-like) 3 109 IPR011009 -
Vimu11g02963 227 Gene3D Transferase(Phosphotransferase) domain 1 1 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02963 Vimu-Chr11 49320732 49321415 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02963 5 220 Receptor kinase-like Gene Family AT5G56890 60.000 5.14e-74 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vimu11g02963 PK_Tyr_Ser-Thr 1.6e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02963 - - gmx:100814040 384.8