Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02954 ATGGTACAACTCATATTGGTGAAGTTGCTAGAGGACATCATGGATGGCAGCCGAATACTGATATTCATGGATACCAAAAAAGGATGTGATCAGATCACTAGGCAACTCCGCATGGATGGCTGGCCTGCACTTTCAATTCATGGAGACAAAAGTCAAGCAGAAAGAGATTGGGTGCTCTCAGAATTTAAATCAGGAAAAAGTCCTATTATGACTGCAACAGATGTTGCAGCCCGTGGTTTAGATGTGAAGGATGTGAAGTATGTAATAAATTATGACTTTCCGGGGTCACTTGAAGACTATGTCCATCGCATTGGGCGGACTGGGAGAGCTGGTGCAAAAGGAACTGCCTACACATTCTTCACAGCTGCTAATGCTAGATTTGCAAAGGAACTAATCGCTATACTTGAGGAAGCTGGACAGAAAGTTAGTCCTGAATTAGCAGCAATGGGCCGTGGTGCACCACCTCTGCCTTCAGGTCAGTTAACCCTACTCTAG 495 0.4485 MVQLILVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIAILEEAGQKVSPELAAMGRGAPPLPSGQLTLL 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02954 164 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 8 149 - -
Vimu11g02954 164 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 146 IPR027417 -
Vimu11g02954 164 Gene3D - 2 151 IPR027417 -
Vimu11g02954 164 SMART helicmild6 30 111 IPR001650 -
Vimu11g02954 164 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 5 150 IPR001650 -
Vimu11g02954 164 CDD SF2_C_DEAD 4 120 - -
Vimu11g02954 164 Pfam Helicase conserved C-terminal domain 5 111 IPR001650 -
Vimu11g02954 164 FunFam ATP-dependent RNA helicase RhlB 2 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02954 Vimu-Chr11 49256549 49259053 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02954 10 131 Eukaryotic Initiation Factors Gene Family AT3G19760 40.984 1.95e-30 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02954 K12823 - gmx:100790464 296.589