LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu11g02949	ATGCTTTGGGATGATGAAACATCTTTACCCTTTGTGAAGAACAAAGGCGAATTGAACAACCAAGATGAGGAAGCTTTTGCATTTTTCAACCACACAAAAGTAATATGCAGAAAGTGTCCCAGATTACACCACATGTTCCCAACACTCTTTGCTCACCATCAGAAAACTATAACAGTGGACACAAAACCTTCAAAATCTGTTGATGACAGAGAGCTAATGAGCTTTGTGGGTGGGTTGGATTTGTGTGATGGAAGATATGACACAGAGCAGCATTCATTGTTTCAAACACTCATTAGGGAATCTCATTGTTATGATTTCTACCAAACAAGCATTGAAGAAGCTAGCCTCAACAAAGGAGGGCCAAGGGCACCTTGGCATGATGCTCATGCTTGTGTTATTGGTGAGGCTGCTTGGGATGTGCTAGCCAATTTTGAGCAAAGATGGACAAAGCAGTGTGATCCTTCTTTTCTAATCCCTTCTAGCACCTTGGCAAATCTTATGCCAAAGACATGCTCAAGCATTCCTAGGGAGAGGAATTGGAAAGTTCAAATATACAGGTCAATTGATCATATCTCAGTTAGTGAGTTGTCTACAAAGTCAACTGTGGAGAGGAGCATCCATGAAGCTTATGTTGAAGCAATTAGGCGTGCTGAAAGGTTTATATACATTGAAAGCCAGTATTTCATTGGAGGATGCCATTGGTGGAAGAAAGATAGGCACTGTGGTTGTACTAATCTAATTCCCATTGAAATTGCACTGAAGGTGGTAAGTAAGATTAAGGCAAAGGAGAGATTTGCTGTGTACATAGTCATACCAATGTGGCCAGAAGGAGAACCTGAAAGTGAACCTGTTCAAGATATACTGCATTGGACTAGAGAAACAATGGCAATGATGTATAGGTTGATTGGAGAAGCAATACAGGAAAGTGAGCAACAGGGACACCCTAGAGACTACTTGAATTTCTTCTGTCTTGCAAACAGGGAGCAGAAGGGACCAGGAGAGTATCTTCCACTAGATTCACCCCAACCTGAAACTCAATACTGGAATGCTCAAAAGAATAGGAGATTCATGGTTTACGTTCACTCCAAGTTCATGATCGGATCAGCTAATGTAAACCAAAGATCCATGGACGGGCAAAGGGACACTGAGATTGCAATAGGATGCTACCAGTCTCAAGATGAAGATGATAATGAGGAAATGAACCTAGATGAAGTTCAAGCATATAGATTGTCTCTATGGTATGAGCACACAGTGAGTGTTGATGAGTTGTTCTTGGAGCCAGAAAGATTGGAATGTGTGGAGAGAATGAGATCAATAGGAGATGAAATGTGGGAAATCTACAGCAGTGAAGAGGTTAGAGACATGGAAGGTGTTCACCTTGTGAGTTACCCTGTGAGAGTAACACCAGAAGGGTATGTGAAAGACCTCACTCATGGAGTTCATTTTCCTGATACAAATTCTCTTGCCAAAGGCAAAAGGTCTAAAATATTGCCTCCTATCTTTACCACTTAG	1512	0.414	MLWDDETSLPFVKNKGELNNQDEEAFAFFNHTKVICRKCPRLHHMFPTLFAHHQKTITVDTKPSKSVDDRELMSFVGGLDLCDGRYDTEQHSLFQTLIRESHCYDFYQTSIEEASLNKGGPRAPWHDAHACVIGEAAWDVLANFEQRWTKQCDPSFLIPSSTLANLMPKTCSSIPRERNWKVQIYRSIDHISVSELSTKSTVERSIHEAYVEAIRRAERFIYIESQYFIGGCHWWKKDRHCGCTNLIPIEIALKVVSKIKAKERFAVYIVIPMWPEGEPESEPVQDILHWTRETMAMMYRLIGEAIQESEQQGHPRDYLNFFCLANREQKGPGEYLPLDSPQPETQYWNAQKNRRFMVYVHSKFMIGSANVNQRSMDGQRDTEIAIGCYQSQDEDDNEEMNLDEVQAYRLSLWYEHTVSVDELFLEPERLECVERMRSIGDEMWEIYSSEEVRDMEGVHLVSYPVRVTPEGYVKDLTHGVHFPDTNSLAKGKRSKILPPIFTT	503

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vimu11g02949	503	SUPERFAMILY	Phospholipase D/nuclease	193	431	-	-
Vimu11g02949	503	Pfam	Phospholipase D C terminal	421	492	IPR024632	-
Vimu11g02949	503	SUPERFAMILY	Phospholipase D/nuclease	45	158	-	-
Vimu11g02949	503	Pfam	Phospholipase D Active site motif	49	85	IPR001736	GO:0003824
Vimu11g02949	503	ProSiteProfiles	Phospholipase D phosphodiesterase active site profile.	48	85	IPR001736	GO:0003824
Vimu11g02949	503	Gene3D	Endonuclease Chain A	2	171	-	-
Vimu11g02949	503	Gene3D	Endonuclease Chain A	172	401	-	-
Vimu11g02949	503	PANTHER	PHOSPHOLIPASE D	1	485	IPR015679	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu11g02949	Vimu-Chr11	49231935	49235382	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu11g02949	1	503	Phospholipase D Gene Family (Wang group)	AT1G55180	61.464	0.0	662

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu11g02949	K01115		-	gmx:100789235	956.436

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu11g02949	11	49231935	49235382	Vimu11g02949	11	49231935	49235382	ECH
	Vimu4g00315	4	2318019	2320738	Vimu11g02949	11	49231935	49235382	PCT

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