Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02949 ATGCTTTGGGATGATGAAACATCTTTACCCTTTGTGAAGAACAAAGGCGAATTGAACAACCAAGATGAGGAAGCTTTTGCATTTTTCAACCACACAAAAGTAATATGCAGAAAGTGTCCCAGATTACACCACATGTTCCCAACACTCTTTGCTCACCATCAGAAAACTATAACAGTGGACACAAAACCTTCAAAATCTGTTGATGACAGAGAGCTAATGAGCTTTGTGGGTGGGTTGGATTTGTGTGATGGAAGATATGACACAGAGCAGCATTCATTGTTTCAAACACTCATTAGGGAATCTCATTGTTATGATTTCTACCAAACAAGCATTGAAGAAGCTAGCCTCAACAAAGGAGGGCCAAGGGCACCTTGGCATGATGCTCATGCTTGTGTTATTGGTGAGGCTGCTTGGGATGTGCTAGCCAATTTTGAGCAAAGATGGACAAAGCAGTGTGATCCTTCTTTTCTAATCCCTTCTAGCACCTTGGCAAATCTTATGCCAAAGACATGCTCAAGCATTCCTAGGGAGAGGAATTGGAAAGTTCAAATATACAGGTCAATTGATCATATCTCAGTTAGTGAGTTGTCTACAAAGTCAACTGTGGAGAGGAGCATCCATGAAGCTTATGTTGAAGCAATTAGGCGTGCTGAAAGGTTTATATACATTGAAAGCCAGTATTTCATTGGAGGATGCCATTGGTGGAAGAAAGATAGGCACTGTGGTTGTACTAATCTAATTCCCATTGAAATTGCACTGAAGGTGGTAAGTAAGATTAAGGCAAAGGAGAGATTTGCTGTGTACATAGTCATACCAATGTGGCCAGAAGGAGAACCTGAAAGTGAACCTGTTCAAGATATACTGCATTGGACTAGAGAAACAATGGCAATGATGTATAGGTTGATTGGAGAAGCAATACAGGAAAGTGAGCAACAGGGACACCCTAGAGACTACTTGAATTTCTTCTGTCTTGCAAACAGGGAGCAGAAGGGACCAGGAGAGTATCTTCCACTAGATTCACCCCAACCTGAAACTCAATACTGGAATGCTCAAAAGAATAGGAGATTCATGGTTTACGTTCACTCCAAGTTCATGATCGGATCAGCTAATGTAAACCAAAGATCCATGGACGGGCAAAGGGACACTGAGATTGCAATAGGATGCTACCAGTCTCAAGATGAAGATGATAATGAGGAAATGAACCTAGATGAAGTTCAAGCATATAGATTGTCTCTATGGTATGAGCACACAGTGAGTGTTGATGAGTTGTTCTTGGAGCCAGAAAGATTGGAATGTGTGGAGAGAATGAGATCAATAGGAGATGAAATGTGGGAAATCTACAGCAGTGAAGAGGTTAGAGACATGGAAGGTGTTCACCTTGTGAGTTACCCTGTGAGAGTAACACCAGAAGGGTATGTGAAAGACCTCACTCATGGAGTTCATTTTCCTGATACAAATTCTCTTGCCAAAGGCAAAAGGTCTAAAATATTGCCTCCTATCTTTACCACTTAG 1512 0.414 MLWDDETSLPFVKNKGELNNQDEEAFAFFNHTKVICRKCPRLHHMFPTLFAHHQKTITVDTKPSKSVDDRELMSFVGGLDLCDGRYDTEQHSLFQTLIRESHCYDFYQTSIEEASLNKGGPRAPWHDAHACVIGEAAWDVLANFEQRWTKQCDPSFLIPSSTLANLMPKTCSSIPRERNWKVQIYRSIDHISVSELSTKSTVERSIHEAYVEAIRRAERFIYIESQYFIGGCHWWKKDRHCGCTNLIPIEIALKVVSKIKAKERFAVYIVIPMWPEGEPESEPVQDILHWTRETMAMMYRLIGEAIQESEQQGHPRDYLNFFCLANREQKGPGEYLPLDSPQPETQYWNAQKNRRFMVYVHSKFMIGSANVNQRSMDGQRDTEIAIGCYQSQDEDDNEEMNLDEVQAYRLSLWYEHTVSVDELFLEPERLECVERMRSIGDEMWEIYSSEEVRDMEGVHLVSYPVRVTPEGYVKDLTHGVHFPDTNSLAKGKRSKILPPIFTT 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02949 503 SUPERFAMILY Phospholipase D/nuclease 193 431 - -
Vimu11g02949 503 Pfam Phospholipase D C terminal 421 492 IPR024632 -
Vimu11g02949 503 SUPERFAMILY Phospholipase D/nuclease 45 158 - -
Vimu11g02949 503 Pfam Phospholipase D Active site motif 49 85 IPR001736 GO:0003824
Vimu11g02949 503 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 48 85 IPR001736 GO:0003824
Vimu11g02949 503 Gene3D Endonuclease Chain A 2 171 - -
Vimu11g02949 503 Gene3D Endonuclease Chain A 172 401 - -
Vimu11g02949 503 PANTHER PHOSPHOLIPASE D 1 485 IPR015679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02949 Vimu-Chr11 49231935 49235382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02949 1 503 Phospholipase D Gene Family (Wang group) AT1G55180 61.464 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02949 K01115 - gmx:100789235 956.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02949 11 49231935 49235382 Vimu11g02949 11 49231935 49235382 ECH
Vimu4g00315 4 2318019 2320738 Vimu11g02949 11 49231935 49235382 PCT