Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02947 ATGGCTTCAAGCTCTGGTGCAGAAGAAGCGTCACTGGACGATTACGCTTCCTTGATTGCGACCACCGATGTGGAGCTTCTGAAGCGAGCATGGCGCAACGAGAAGGCGGCGCCGGAGATTCTCCGCTACGAATATCGTTTGATTTCCCGCGTCAAGGAACAGATTCAACTCATGGAGGAAACCGTGGAGGAGAAATCCAGTGTCGGTAATGATCCTCTCTCAGTGTCTCTGTATCAGATGGACTTGGACAGAACACAATTTCTGTTGAGATCCTATCTCCGCATCCGCATACAGAAGATTGAGAAGTACATGTTCCACATCCTAAAAACCGAAGAACTTTGGTCCAGGCTATCCAAAGACGAGAAAGATTTCGCCAGAACGTGTACAAGTGACCTAAACCAACATCTAGAGTTGACTGTTCTGTCAAAGCTGCCAGAAAATTATCAGTCTGTTCTAAAGCAATCTATAACAAGTGAAGAAGACGACATGGTCCCAGAACCACAACTAGACACATTTGTTTTATGTAGAAGTAAAGAGTATCTAACGGGCATTCAACTCGAAGATGGACCTGCTGATGACAGGCAATTTTCGTCGAAGCTGTTTGAGATGGAGCCAGGTGTCCTCCATTTCATATGTTACAGATCAATAAAAGCACTTGTGGAGAGCGGCAAAATTGATCTACTCTGA 687 0.4541 MASSSGAEEASLDDYASLIATTDVELLKRAWRNEKAAPEILRYEYRLISRVKEQIQLMEETVEEKSSVGNDPLSVSLYQMDLDRTQFLLRSYLRIRIQKIEKYMFHILKTEELWSRLSKDEKDFARTCTSDLNQHLELTVLSKLPENYQSVLKQSITSEEDDMVPEPQLDTFVLCRSKEYLTGIQLEDGPADDRQFSSKLFEMEPGVLHFICYRSIKALVESGKIDLL 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02947 228 CDD GINS_B_Sld5 167 228 IPR031633 -
Vimu11g02947 228 Pfam GINS complex protein 50 122 IPR021151 -
Vimu11g02947 228 Pfam DNA replication complex GINS protein SLD5 C-terminus 167 228 IPR031633 -
Vimu11g02947 228 Gene3D - 9 218 - -
Vimu11g02947 228 CDD GINS_A_Sld5 23 141 IPR038749 -
Vimu11g02947 228 PANTHER SLD5 PROTEIN 8 228 IPR008591 GO:0006261
Vimu11g02947 228 SUPERFAMILY PriA/YqbF domain 169 228 - -
Vimu11g02947 228 PIRSF GINS_Sld5 1 228 IPR008591 GO:0006261
Vimu11g02947 228 FunFam DNA replication complex GINS protein SLD5 8 218 - -
Vimu11g02947 228 SUPERFAMILY GINS helical bundle-like 20 152 IPR036224 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02947 1 172 Core DNA Replication Machinery Family AT5G49010 63.953 8.35e-69 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02947 K10735 - gmx:100784291 357.836