Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02946 ATGAGTCGAGAGCAACAGAAACGGGGGAAGCAAGAGAAAGGTTCTGATGGTGCTGAGAAGGTCATTGTTGCCGTTAAGGCATCTAAAGAAATTCCAAAGACTGCTCTTGTTTGGTCCCTGACCCATGTTGTTCAACCTGGGGATTGCATTACACTGCTAGTGGTTGTGCCTTCACAAAGTTCAGGGGATGTGATTCCATTGATTCAGATGCGAGTATGTGACATGGTCAGTGGCAGAAGATTATGGGGTTTTCCGAGATTTGCTGGTGACTGTGCCAGTGGTATTAAGAAGTACCCTCCAGGAACAATATCAGAGCAGAAGAGTGATATCACTGATTCTTGCTCTCAGATGATCCTTCAACTCCATAACGTCTATGATCCAAACAAGATTAATGTCAGGATTAAAATTGTTTCTGGATCACCTTGTGGAGCAGTGGCAGCAGAAGCCAAAAAAGCACAAGCCAATTGGGTCGTGTTAGACAAACAGCTCAAACATGAGGAAAAGCGATGCATGGAAGAACTACAGTGTAACATCGTGGTTATGAAGCGTTCTCAACCAAAAGTACTGCGGTTGAATTTGATTGGACCTCCGAAGAAGGATGTTGAAGAAGCAGGTCCATCACCTCCAGAGCAAGATGACATGTCAGAAAAGCGAAGCAAAATAAAGCTTGATTCTTTAAATTCTATCAAAGGACCTGCTGTAACTCCATCTAGCAGCCCTGAGCTAGGGACACCATTCACTGCAACCGAAGCTGGTACTTCATCAGTTTCAAGCTCTGATCCGGGAACTTCACCATTCTTCATCTCAGAGACGAATGGTGAGTCCAAAAAAGAGGAAACTATCCAAGAAAGTCAAGAGCTTTGTGATACTAATTCAGACACTGAAAGTGAAAGTCTGTCCACATCTTCAGCAAGCATGAGATACCAACCATGGATCACAGAATTGCTTTTGCATCAACAATCATCACAACGCAATGAAGAGAGATCAGAGACAACTCATGGTATGCCTCAAGCATCTACAACCAGAGCTTTCCTAGATAAGTATTCTAGGCTTGACAGAGGAGCTGGATATGAAATATCAACCTATAGGAATGACTTGGATTTCAGTGGAAATTTAAGAGAAGCAATAGCATTATCTGGAAATGCCCCACCTGGTCCCCCTCCACTGTGCTCAATATGTCAACACAAGGCACCTGTTTTTGGAAAACCTCCAAGATGGTTCAGCTATGCTGAGTTAGAACTTGCTACAGGCGGTTTTTCCCAGGCCAACTTCCTGGCTGAAGGAGGGTTTGGATCTGTTCACAGAGGGGTTCTACCAGAAGGACAAGTCATCGCCGTCAAGCAACATAAATTAGCTAGTTCTCAAGGTGATCTTGAATTTTGTTCAGAGGTGGAAGTCCTGAGCTGTGCTCAACACCGGAATGTTGTTATGCTCATTGGGTTCTGTATAGAGGATAAGAGAAGGCTACTGGTTTATGAGTACATATGCAATGGATCATTGGATTCTCATTTATATGGGCGACAAAAGGATCCATTAGAGTGGTCTGCACGGCAAAAAATTGCTGTTGGTGCAGCTCGTGGATTACGATATCTTCATGAAGAGTGCAGAGTGGGTTGTATTATCCACCGTGACATGAGGCCAAACAACATTCTCATAACTCACGATTTTGAACCTCTGGTTGGTGATTTTGGACTGGCAAGGTGGCAGCCTGATGGAGACACAGGTGTGGAAACTAGAGTGATTGGAACATTTGGGTATTTGGCTCCTGAATATGCACAAAGTGGTCAAATCACTGAAAAAGCTGATGTTTATTCCTTTGGGGTGGTATTAGTTGAGCTTGTTACTGGGAGAAAAGCTGTGGATCTCACTAGGCCAAAGGGACAGCAGTGCCTTACCGAGTGGGCACGACCTCTCTTAGAAGAATATGCAACCGAGGAACTGATTGATCCAAGACTTGGTAACCACTATTCTGAAAATGAGGTCTATTGCATGCTTCATGCTGCCTCATTATGCATACAGAGAGATCCTCAATGTAGGCCACGCATGTCACAGGTTCTCCGAATACTAGAGGGTGACATGGTGATGGACACAAATTACATCTCCACTCCAGGCTATGATGCAGGAAACCGAAGTGGGAGACTGTGGTCAGAGCCATTGCAAAGGCAGCACCATTATAGTGGTCCCCTTTTAGAAGAGACTCTGGAGTCCTTCAGCGGGAAGCTATCCCTTGACAAGTACAAGCCTTCCTACTGGGGTGATAGGGACAAGGCTAGGAGGGCCTCATGTGAAGATGATATTTGA 2301 0.4476 MSREQQKRGKQEKGSDGAEKVIVAVKASKEIPKTALVWSLTHVVQPGDCITLLVVVPSQSSGDVIPLIQMRVCDMVSGRRLWGFPRFAGDCASGIKKYPPGTISEQKSDITDSCSQMILQLHNVYDPNKINVRIKIVSGSPCGAVAAEAKKAQANWVVLDKQLKHEEKRCMEELQCNIVVMKRSQPKVLRLNLIGPPKKDVEEAGPSPPEQDDMSEKRSKIKLDSLNSIKGPAVTPSSSPELGTPFTATEAGTSSVSSSDPGTSPFFISETNGESKKEETIQESQELCDTNSDTESESLSTSSASMRYQPWITELLLHQQSSQRNEERSETTHGMPQASTTRAFLDKYSRLDRGAGYEISTYRNDLDFSGNLREAIALSGNAPPGPPPLCSICQHKAPVFGKPPRWFSYAELELATGGFSQANFLAEGGFGSVHRGVLPEGQVIAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYGRQKDPLEWSARQKIAVGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLTRPKGQQCLTEWARPLLEEYATEELIDPRLGNHYSENEVYCMLHAASLCIQRDPQCRPRMSQVLRILEGDMVMDTNYISTPGYDAGNRSGRLWSEPLQRQHHYSGPLLEETLESFSGKLSLDKYKPSYWGDRDKARRASCEDDI 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02946 766 Gene3D Phosphorylase Kinase; domain 1 391 494 - -
Vimu11g02946 766 MobiDBLite consensus disorder prediction 285 303 - -
Vimu11g02946 766 MobiDBLite consensus disorder prediction 230 271 - -
Vimu11g02946 766 Pfam Protein tyrosine and serine/threonine kinase 423 688 IPR001245 GO:0004672|GO:0006468
Vimu11g02946 766 PANTHER OS01G0750732 PROTEIN 254 697 - -
Vimu11g02946 766 ProSitePatterns Tyrosine protein kinases specific active-site signature. 540 552 IPR008266 GO:0004672|GO:0006468
Vimu11g02946 766 MobiDBLite consensus disorder prediction 191 303 - -
Vimu11g02946 766 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 391 494 - -
Vimu11g02946 766 Gene3D Transferase(Phosphotransferase) domain 1 495 701 - -
Vimu11g02946 766 ProSiteProfiles Protein kinase domain profile. 419 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g02946 766 MobiDBLite consensus disorder prediction 319 339 - -
Vimu11g02946 766 CDD STKc_IRAK 425 691 - -
Vimu11g02946 766 MobiDBLite consensus disorder prediction 203 224 - -
Vimu11g02946 766 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 495 698 - -
Vimu11g02946 766 SUPERFAMILY Protein kinase-like (PK-like) 403 697 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02946 Vimu-Chr11 49212373 49216369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02946 399 708 Trihelix Transcription Factor Family AT1G70460 51.097 7.36e-101 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vimu11g02946 PK_Tyr_Ser-Thr 3.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02946 - - gmx:100816340 1431.77