Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02945 ATGCAACACAAAAATAGTGATTTCCATGAAGACCTTCTTCTAAAGTTTCCCATTGCTGCGTCTAAAAGTCTTCATCATTCTTTGATGATGATGATGGAGAGTTTTAATGGATACGATGATGATTTCTCAAGGATTTCCCTGAAGCATTTTCAGTTCACTTCTTTCTGTTCACAAAGGAGCACAATAGACACTATAAATCTAATTTTCGTCTGTGTATTCTACGCTTCCACCATTGTCAGTTTAATCAGAAGAAGTTTTATAAATGGGAGTCATACCAAAACCAGGTTTTTCCTTTTAGTCTCTATCTGTTGTGCGATCACTAGCGTCGTCTTTTACAGTATTGCCCTGTGGAGTCTCATAGCCAAAACTGGGAACTCCATGGCTAACCACCTCAGCTGGTTAGCATGCGTTGTACGAGGATTTGTTTGGACTTCTTTGGCAGTTTCTTTGCATGTTCAGGGACACAAATGGATCAAAATTCTAAACTCTGTCTGGTGGGCATGTTCCTTTGCACTAACTTCGGCTCTCCACATTGAAATTCTGCTTAGAAAGCATGCAATAGAAATTTTCGATGTCCTACTATGGCTCTTACATACGCTTCTTCTCTTCTGTGCCTTCCAAAACCTTGGTTACTTTGTCATTCAAAATGTGTCAAAGAGTTTATCTGAACCGTTGTTAGCTCGGGAAGTTGACTCAGAAGAAACAAGACTAGGTCGTGCTTCCTTTCTAAGCAAGTTGACTTTCTCTTGGGTTAACTCCTTACTCAGTTTGGGTTACTCAAAGCCACTATCTCTTGAAGACATCCCTTCCCTTCTTTCTGAAGATAAGGCAGACCTGTCCCACCAAAACTTCATGCATGCATGGCAATCCCTTGCGAGGGAGAGAAGCAAGAACAACACCAAGAACTTCGTGTTTTGGTCCATTGTTAGAACTCACTTAAAAGAGAACATATTAATATCTGTTTACGCATTGCTCAGAACCGTTGCTGTGACTGTTTCTCCTTTAATACTCTATGCTTTTGTCAACTTTTCAAATAGTAGGGATTCCGGGGAGACAGATTTCAGAGAAGGTCTTACCATAGTGGGTTTTCTTATTCTCTCCAAAGTGGTTGATTCTGTGTCACAGAGACACTGGTTTTTTTGTAGCAGGAGGTCGGGGTTGAAGATGAGATCAGCTCTGATGGTTGCAGTGTACGAAAAACAACTAAAGCTTTCAAACTCAGCAAGGACAAGACACTCAACAGGTGAAATTGTGAATTACATTGCTGTTGATGCGTATCGCATGGGAGAATTTCCATGGTGGTTTCATCTAACATGGGCATGTACATTGCAACTTCTTCTATCTATCAGTGTCCTGTATGGAGTTGTGGGAGTAGGTGCACTTCCTGGTATAATCCCTCTTCTTATATGTGGACTTATCAATGTACCATTTGCCAAGATCCTACAAAGGTGCATGGCACAGTTCATGATTTCACAGGATGAGCGTCTTAGAGCAACTTCAGAAATTCTAAATAGCATGAAAATCATCAAGTTACAGTCCTGGGAAGAGAAATTCAAGAGTTTGGTTGAGAAACTACGTGCGAAAGAGTTCATTTGGCTATCTAAGGCACAAATTTTGAAAGCTTATGGGTCACTTTTATATTGGATGTCTCCTACCATCGTTTCTGCTGTTGTTTTCATCGGTTGTGCTGTTTTCAATAGTGCTCCTTTAAATGCTGGGACCATATTTACAGTTCTTGCAACGTTGAGGAACTTGGCAGAACCTGTTCGAATGATTCCGGAGGCTCTATCTGTTCTGATCCAAGTTAAGGTATCTTTTGATCGTCTCAATACCTTTTTGTTTGACGAAGAACTAGATACCAGTGATGGTAGCAGAAGCTGTAAAAACCGAAGTTCAATTAATGCGGTAGAAATCCAAGCTGGCAACTTCATTTGGGACCATGAATCAGTGTCCCCAACTTTAAGGGATGTGAATTTAGAAATCAAATGGGGACAGAAAGTTGCAGTTTGTGGGCCAGTTGGAGCTGGAAAATCATCTCTTTTGTATGCAATATTAGGAGAGATTCCCAAGATTTCAGGAACTGTTAATGTGTTCGGCAACATAGCATATGTTTCTCAAACTTCTTGGATACAAAGTGGGACGGTTCGAGAAAATATACTATTCGGCAAGCCAATGGAGAAAACAAGATATGAGACTGCCATTAGAGTTTGTGCCTTGGATAAGGATATTAATGATTTTAGTCATGGTGATCTTACAGAAATAGGTCAGCGAGGGATTAACTTGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTCGTGCTGTCTACAATGATGCTGACATTTATCTCCTTGATGACCCTTTCAGTGCAGTTGATGCTCACACTGCTGCTATCCTTTTCAAAGACTGTGTAATGACGGCTCTAAGAGAAAAAACAGTCATTCTAGTGACACATCAAGTGGAGTTTCTCTCGGAAGTTGATACAATCCTGGTAATGGAAGGTGGAAAAGTTACTGAATCAGGAAAGTATGAGAATCTCTTAACAACTGGGACTGCCTTTGAACAACTTGTGAGCGCTCACAAGGATGCAATTACAGAGTTGGATCAGAATAATGAGAACAGAACTCATAGAGAAGAGTCTCAAGGTGTTTATAAAAATCAAAGTGAGGAGGAGATTTCTACGGAGGGCCAACATGGGATGCAACTTACACAAGAAGAAGAAAAAGAGATTGGTGATGTCGGCTTGAAGACATTCTGGGATTATATTTCCTTTTCCAGGGGTTCATTGATGCTGTTTTATATAATTTTGGCACAATGTGCTTTTGTTGCTTTGCAGACTGCATCAACGGTTTGGCTTGCTTTAGCCATTGATATTCCAAAAATAACTAGTGCCTTCTTAGTTGGGGTGTACTCATTAATTTCATTTTCTGGTGCTGCGTTTATATATATAAGGTGTCTCTTGACCTCTTACCTTGGATTAAATGCTTCCAAATCTTTCTTCACAAGTTTCAATACTGCTATCTTCAATGCTCCTATGCTGTTCTTTGACTCAACCCCCATAGGAAGGATTTTAACAAGAGCTTCATCAGATTTAAGTACTTTGGATTTTGACATACCTTATTCGATCACCTTTGCAACATGTATACCACTTGAAATTTTGGTAATAATTGGTGCAATGGTTTTAGTGACATGGCCAGTTCTCATTGTTGCCATTCCTGCAATAGTTGCATCAAAATATGTTCAGGAATATTATCAAGCCTCGTCAAGGGAATTAATGAGGATCAATGGAACCACGAAAGCTCCTGTGATGAATTTTGCAGCTGAGACATCACTTGGTGTTGTTACTGTGAGAGCATTCGATATGGTAGAAAGATTTTTTAAAAACTACTTAGAGCTTGTGGACACAGACGCAACACTGTTTTTTCATTCTAATGTGGCCACGGAATGGTTACTTTTGAGGATTGAATCACTTCTAAATTTGATAGTCATCACTTCAGCTTTGCTACTTGTTCTATTTCCTCAGGGATACGTGTCCTCAGGTCTTGTGGGACTATCTCTCTCTTACGCATTAGCCTTGACGTTTGCACATATATTTTGGACTCGATGGTATTGCAACTTATTAAACTATCTTATCTCTGTTGAAAGAATCAAACAATTCGTTCACCTACCGTCAGAGCCTCCTGCTATTGTGAAGGACCACCAACCTCCATCTTCATGGCCTTCCAAAGGCAGGATTGACCTTCAAGCCTTAGAAATTAGATACCGTCCGAATGCTCCATTAGTGCTTAAGGGTATCACTTGCACGTTTAGAGAAGGGAGTAGAGTGGGAGTTGTAGGAAGAACAGGAAGTGGAAAGAGTACACTGATAAGTGCTTTGTTTCGCTTAGTTGAGCCAGCAAGCGGTGACATTCTCATAGATGGGATTAACATATGCTCAATGGGGTTGAAGGATTTGAGAATGAAACTAAGCATCATCCCTCAGGAACCAACTCTCTTCAAGGGCAGCATCAGAACCAACTTGGACCCTTTAGGTTTGTATTCAGATGATGAAATATGGAAGGCTTTAGAGAAATGTCAGCTTAAGGAAACTATCAGCCATCTTCCAAATCTCTTAGACTCTCAGGTGAGTGATGAAGGTGGAAATTGGAGCTTGGGACAACGGCAACTGTTTTGTCTAGGAAGAGTACTGCTTAAGAGGAACAGAATTCTTGTTCTGGATGAAGCAACTGCCTCCATTGACTCTGCCACAGATGCAATTCTACAAAGAATTATCAGACAAGAGTTTGAAGCATGCACAGTTATTACAGTTGCTCATAGGGTTCCAACTGTAATAGACAGTGATATGGTTATGGTCCTCTCCTATGGGAAAATGGTGGAATATGATGAGCCTTCAAGACTAATGGATACCAACTCTTCATTCTCTAAGCTGGTAGCTGAATATTGGGCCAGCTGCAGCAAGAATTCCTCATAA 4470 0.4047 MQHKNSDFHEDLLLKFPIAASKSLHHSLMMMMESFNGYDDDFSRISLKHFQFTSFCSQRSTIDTINLIFVCVFYASTIVSLIRRSFINGSHTKTRFFLLVSICCAITSVVFYSIALWSLIAKTGNSMANHLSWLACVVRGFVWTSLAVSLHVQGHKWIKILNSVWWACSFALTSALHIEILLRKHAIEIFDVLLWLLHTLLLFCAFQNLGYFVIQNVSKSLSEPLLAREVDSEETRLGRASFLSKLTFSWVNSLLSLGYSKPLSLEDIPSLLSEDKADLSHQNFMHAWQSLARERSKNNTKNFVFWSIVRTHLKENILISVYALLRTVAVTVSPLILYAFVNFSNSRDSGETDFREGLTIVGFLILSKVVDSVSQRHWFFCSRRSGLKMRSALMVAVYEKQLKLSNSARTRHSTGEIVNYIAVDAYRMGEFPWWFHLTWACTLQLLLSISVLYGVVGVGALPGIIPLLICGLINVPFAKILQRCMAQFMISQDERLRATSEILNSMKIIKLQSWEEKFKSLVEKLRAKEFIWLSKAQILKAYGSLLYWMSPTIVSAVVFIGCAVFNSAPLNAGTIFTVLATLRNLAEPVRMIPEALSVLIQVKVSFDRLNTFLFDEELDTSDGSRSCKNRSSINAVEIQAGNFIWDHESVSPTLRDVNLEIKWGQKVAVCGPVGAGKSSLLYAILGEIPKISGTVNVFGNIAYVSQTSWIQSGTVRENILFGKPMEKTRYETAIRVCALDKDINDFSHGDLTEIGQRGINLSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFKDCVMTALREKTVILVTHQVEFLSEVDTILVMEGGKVTESGKYENLLTTGTAFEQLVSAHKDAITELDQNNENRTHREESQGVYKNQSEEEISTEGQHGMQLTQEEEKEIGDVGLKTFWDYISFSRGSLMLFYIILAQCAFVALQTASTVWLALAIDIPKITSAFLVGVYSLISFSGAAFIYIRCLLTSYLGLNASKSFFTSFNTAIFNAPMLFFDSTPIGRILTRASSDLSTLDFDIPYSITFATCIPLEILVIIGAMVLVTWPVLIVAIPAIVASKYVQEYYQASSRELMRINGTTKAPVMNFAAETSLGVVTVRAFDMVERFFKNYLELVDTDATLFFHSNVATEWLLLRIESLLNLIVITSALLLVLFPQGYVSSGLVGLSLSYALALTFAHIFWTRWYCNLLNYLISVERIKQFVHLPSEPPAIVKDHQPPSSWPSKGRIDLQALEIRYRPNAPLVLKGITCTFREGSRVGVVGRTGSGKSTLISALFRLVEPASGDILIDGINICSMGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKALEKCQLKETISHLPNLLDSQVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRQEFEACTVITVAHRVPTVIDSDMVMVLSYGKMVEYDEPSRLMDTNSSFSKLVAEYWASCSKNSS 1489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02945 1489 ProSitePatterns ABC transporters family signature. 761 775 IPR017871 GO:0005524|GO:0016887
Vimu11g02945 1489 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 934 1195 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu11g02945 1489 MobiDBLite consensus disorder prediction 869 888 - -
Vimu11g02945 1489 Gene3D - 1228 1479 IPR027417 -
Vimu11g02945 1489 FunFam ABC transporter C family member 3 1228 1479 - -
Vimu11g02945 1489 CDD ABC_6TM_ABCC_D1 318 609 IPR044746 GO:0140359
Vimu11g02945 1489 Pfam ABC transporter 1262 1410 IPR003439 GO:0005524
Vimu11g02945 1489 FunFam ABC transporter C family member 5 894 1226 - -
Vimu11g02945 1489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 635 858 IPR027417 -
Vimu11g02945 1489 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 638 859 IPR003439 GO:0005524
Vimu11g02945 1489 SMART AAA_5 663 836 IPR003593 GO:0016887
Vimu11g02945 1489 SMART AAA_5 1271 1456 IPR003593 GO:0016887
Vimu11g02945 1489 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 239 1481 - -
Vimu11g02945 1489 Pfam ABC transporter transmembrane region 318 580 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu11g02945 1489 Pfam ABC transporter transmembrane region 932 1193 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu11g02945 1489 SUPERFAMILY ABC transporter transmembrane region 919 1227 IPR036640 GO:0005524|GO:0016020
Vimu11g02945 1489 CDD ABC_6TM_ABCC_D2 927 1220 IPR044726 GO:0140359
Vimu11g02945 1489 Gene3D - 643 890 IPR027417 -
Vimu11g02945 1489 MobiDBLite consensus disorder prediction 869 885 - -
Vimu11g02945 1489 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1247 1479 IPR003439 GO:0005524
Vimu11g02945 1489 FunFam Multidrug resistance protein associated1 614 879 - -
Vimu11g02945 1489 FunFam ABC transporter C family member 10 300 617 - -
Vimu11g02945 1489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1235 1478 IPR027417 -
Vimu11g02945 1489 Pfam ABC transporter 654 788 IPR003439 GO:0005524
Vimu11g02945 1489 SUPERFAMILY ABC transporter transmembrane region 305 615 IPR036640 GO:0005524|GO:0016020
Vimu11g02945 1489 CDD ABCC_MRP_domain1 636 836 - -
Vimu11g02945 1489 CDD ABCC_MRP_domain2 1243 1463 - -
Vimu11g02945 1489 Gene3D ABC transporter type 1, transmembrane domain 895 1226 IPR036640 GO:0005524|GO:0016020
Vimu11g02945 1489 Gene3D ABC transporter type 1, transmembrane domain 289 617 IPR036640 GO:0005524|GO:0016020
Vimu11g02945 1489 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 317 601 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02945 Vimu-Chr11 49187351 49193535 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02945 636 865 Calmodulin-binding Proteins AT2G36910 28.400 1.14e-21 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02945 - - gmx:100784827 2367.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02945 11 49187351 49193535 Vimu11g02945 11 49187351 49193535 ECH