Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02941 ATGATGATGAAGGAGATTTTTAATGGATACGCTGATGATTTCTCATGGATTTGTCTGAAGAATTTTGAGTTCACTTCTTTCTGTTCACAAAGGAGCACAATAGACACTATAAATCTAATTTTCATTTGTGTCTTCTACGCTTCCACCATTGTTAGTTTAATCAGAAGAAATTTTATAAATGAAAATCATACCAAAAGCAGGTTTTTAATTTTTGTCTCTATTTGTTGTGCTATCACTGGCGTTGTGTTTTACAGTATTGCCCTATGGAGTCTCATAGCCAAAACTGGGAACTCCATGGCTAACCACCTCAGCTGGTTAGCATGCGTTGTACGAGGATTTGTTTGGACTTCTTTGGCAGTTTCTTTGCATGTTCAGGGACACAAATGGATCAAAATTCTAAACTCTGTCTGGTGGGCATGTTCCTTTGCACTAGTTTCCGCTCTCCAAATAGAAATTCTATTTAGAAAGCATGCAATAGAAATTTTCGATGTCCTACTATGGCTCTTACATACGCTTCTTCTCTTCTGTGCCTTCCAAAACCTTGGTTTCTTTGTCAATCAAAATGAGCTAAAGAGTTTATCAGAACCATTGTTAGCTCGGGAAGTTGACACAGAAGAAACAGGACTAGGTCGTGCTTCCCTTCTGAGCAAGTTTACTTTCTCTTGGGTTAACTCCTTACTCAGTTTGGGTTACTCAAGGCCACTATCTCTTGAAGACATCCCTTCCCTTCTCTCTGAAGATAAGGCAGACCTATCCCACAAAAACTTCATGCATGCATGGCAATCCCTTGCGAGGGAGAGAAGCAAGAACAACACTAAGAACTTGGTGTTTTGGTCCATTGTTAGAACTCACTTAAAAGAGAACATATTAATATCTGTTTACGCATTGCTCAGAACCGTTGCTGTGACTGTTTCTCCTTTAATACTCTATGCTTTTGTCAACTTTTCGAATAGTAGGGATTCCGGGGAGACAGATCCCAGAGAAGGTCTTACCATAGTGGGTTTTCTTATTCTCTCCAAAGTGGTTGATTCTGTGTCACAGAGACACTGGTTTTTTTGTAGCAGGAGGTCGGGGTTGAAGATGAGATCAGCTCTGATGGTTGCAGTGTATGAAAAACAACTAAAGCTTTCAAACTCAGCAAGGACACGACACTCAACAGGTGAAATTGTGAATTACATTGCTGTTGATGCGTATCGCATGGGAGAATTTCCATGGTGGTTTCATCTAACATGGGCATGTACATTGCAAATTCTTCTATCTATCAGTATCCTGTATGGAGTTGTGGGAGTAGGTGCACTTCCCGGTTTAATCCCTCTTCTTATATGTGGACTTCTGAATGTACCAATTGCCAAGATCCTACAAAGGTGCATGGCACAGTTCATGATTTCACAGGATGAGCGTCTTAGAGCAACTTCAGAAATTCTAAATAGCATGAAAATCATCAAGTTACAGTCCTGGGAAGACAAATTCAAGAGTTTGGTTGAGAAACTACGTGCGAAAGAGTTCATTTGGCTATCTAAGGCACAAATTTTGAAAGCTTATGGGTCACTTTTATATTGGATGTCTCCTACCATCGTTTCTGCTGTTGTTTTCATCGGTTGTGCTGTTTTCAGTAGTGCTCCTTTAAATGCGGGGACCATATTTACAGTTCTTGCAACGTTGAGGAACTTGGCAGAACCTGTTCGAATGATTCCGGAGGCTCTATCTGTTCTGATCCAAGTTAAGGTATCTTTTGATCGTCTTAATACCTTTTTGTTTGACGAAGAACTAGATACCAGTGATGGTAGCAGAAGCTATAAAATCCGAAATTCAATTAATGCGGTAGAAATCCAAGCTGGCAACTTCATTTGGGACCATGAATCAGTGTCCCCAACGTTAAGAGATGTGAATTTAGAAATCAAATGGGGACAGAAAGTTGCAGTTTGTGGGCCAGTTGGAGCTGGAAAATCATCTCTTTTGTATGCAATATTAGGAGAGATTCCCAAGATTTCAGGAACTGTTAATGTGTTCGGCAACATAGCATATGTTTCTCAAACTTCTTGGATACAAAGTGGGACGGTTCGAGAGAATATACTATTTGGGAAGCCAATGGAGAAAACAAGATACGAGAGTGCCATTAGAGTTTGTGCCTTGGATAAGGATATCAATGATTTTAGTCATGGTGATCTTACAGAAATAGGTCAGCGAGGGATTAACTTGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTCGTGCTGTCTACAATGATGCTGACATTTATCTCCTCGATGACCCTTTCAGTGCAGTTGATGCTCACACTGCTGCTATCCTTTTCAAAGACTGTGTAATGACGGCTCTAAGAGAAAAAACAGTCATTCTAGTGACACATCAAGTGGAGTTTCTCTCGGAAGTTGATACAATCCTGGTAATGGAAGGTGGAAAAGTTACTGAATCAGGAAAGTATGAGAATCTCTTAACAACTGGGACTGCCTTTGAACAACTTGTGAGCGCTCACAAGGATGCAATTACAGAGTTGGATCAGAATAATGAGAACAGAACTCATAGAGAAGAGTCTCAAGGTGTTTATAAAAATCAAAGTGAGGAGGAGATTTCTACGGAGGGTCAACTTGGGATGCAACTTACACAAGAAGAAGAAAAAGAGATTGGTGATGTCGGCTTGAAGACATTCTGGGATTATATTTCCTTTTCCAGGGGTTCATTGATGCTGTTTTATATAATTTTGGCACAATGTGCTTTTGTTGCTTTGCAGACTGCATCAACGGTTTGGCTTGCTTTAGCCATTGATATTCCAAAAATAACTAGTGCCTTCTTGGTTGGGGTGTACTCATTAATTTCATTTTCTGGTGCTGCGTTTATATATATAAGGTGTCTCTTGACCTCTTACCTTGGATTAAATGCTTCCAAATCTTTCTTCACAAGTTTCAATACTGCTATCTTCAATGCTCCTATGCTGTTCTTTGACTCAACCCCCATAGGAAGGATTTTAACAAGAGCTTCATCAGATTTAAGTACTTTGGATTTTGACATACCTTATTCGATCACCTTTGCAACATGTTTACCGATTGAAATTTTGGTAATAATTGGTGCAATGGTTTTAGTGACATGGCCAGTTCTCATTGTTGCCATTCCTGCAATAGTTGCATCAAAATATGTTCAGGAATATTATCAAGCCTCGTCAAGGGAATTAATGAGGATCAATGGAACCACGAAAGCTCCTGTGATGAATTTTGCAACTGAAACATCACTTGGTGTTGTTACTGTGAGAGCATTCGATATGGTAGAAAGATTTTTTAAAAACTACTTAAAGCTTGTCGACACAGACGCATCACTGTTTTTCCATTCAAATGTGACCACGGAATGGTTACTTTTGAGGATTGAAGCACTTCAAAATTTGACAGTCATCACTTCAGCTTTGCTACTTGTTCTATTTCCTCAGGGATACGTGTCCTCAGGTCTTGTGGGACTATCTCTCTCTTACGCATTATCCTTGACATCTGGATATATATTTTGGACTCGAATGTATTGCAACTTATTAAACTATCTTATCTCTGTTGAAAGAATTAAGCAATTCATTCACCTACCATCACAACCTCCTGCTATTGTGAAGGACCACCAACCTCCATCTTCATGGCCTTCCAAAGGCAGGATTGACCTTCAAGCCTTAGAAATTAGATACCGTCCGAATGCTCCATTAGTGCTTAAGGGTATCACTTGCACGTTTAGAGAAGGGAGTAGAGTGGGAGTTGTAGGAAGAACAGGAAGTGGAAAGAGTACACTGATAAGTGCTTTGTTTCGCTTAGTTGAGCCAGCAAGCGGTGACATTCTCATAGATGGGATTAACATATGCTCAATGGGGTTGAAGGATTTGAGAATGAAACTAAGCATCATCCCTCAGGAACCAACTCTCTTCAAGGGCAGCATCAGAACCAACTTGGACCCTTTAGGTTTGTATTCAGATGATGAAATATGGAAGGCTTTAGAGAAATGTCAGCTTAAGGAAACTATCAGCCATCTTCCAAATCTCTTAGACTCTCAGGTGAGTGATGAAGGTGGAAATTGGAGCTTGGGACAACGGCAACTGTTTTGTCTAGGAAGAGTACTGCTTAAGAGGAACAGAATTCTTGTTCTGGATGAAGCAACTGCCTCCATTGACTCTGCCACAGATGCAATTCTACAAAGAATTATCAGACAAGAGTTTGAAGCATGCACAGTTATTACAGTTGCTCATAGGGTTCCAACTGTAATAGACAGTGATATGGTTATGGTCCTCTCCTATGGGAAAATGGTGGAATATGATGAGCCTTCAAGACTAATGGATACCAACTCTTCATTCTCTAAGCTGGTAGCTGAATATTGGGCCAGCTGCAGCAAGAATTCCTCCTAA 4386 0.4017 MMMKEIFNGYADDFSWICLKNFEFTSFCSQRSTIDTINLIFICVFYASTIVSLIRRNFINENHTKSRFLIFVSICCAITGVVFYSIALWSLIAKTGNSMANHLSWLACVVRGFVWTSLAVSLHVQGHKWIKILNSVWWACSFALVSALQIEILFRKHAIEIFDVLLWLLHTLLLFCAFQNLGFFVNQNELKSLSEPLLAREVDTEETGLGRASLLSKFTFSWVNSLLSLGYSRPLSLEDIPSLLSEDKADLSHKNFMHAWQSLARERSKNNTKNLVFWSIVRTHLKENILISVYALLRTVAVTVSPLILYAFVNFSNSRDSGETDPREGLTIVGFLILSKVVDSVSQRHWFFCSRRSGLKMRSALMVAVYEKQLKLSNSARTRHSTGEIVNYIAVDAYRMGEFPWWFHLTWACTLQILLSISILYGVVGVGALPGLIPLLICGLLNVPIAKILQRCMAQFMISQDERLRATSEILNSMKIIKLQSWEDKFKSLVEKLRAKEFIWLSKAQILKAYGSLLYWMSPTIVSAVVFIGCAVFSSAPLNAGTIFTVLATLRNLAEPVRMIPEALSVLIQVKVSFDRLNTFLFDEELDTSDGSRSYKIRNSINAVEIQAGNFIWDHESVSPTLRDVNLEIKWGQKVAVCGPVGAGKSSLLYAILGEIPKISGTVNVFGNIAYVSQTSWIQSGTVRENILFGKPMEKTRYESAIRVCALDKDINDFSHGDLTEIGQRGINLSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFKDCVMTALREKTVILVTHQVEFLSEVDTILVMEGGKVTESGKYENLLTTGTAFEQLVSAHKDAITELDQNNENRTHREESQGVYKNQSEEEISTEGQLGMQLTQEEEKEIGDVGLKTFWDYISFSRGSLMLFYIILAQCAFVALQTASTVWLALAIDIPKITSAFLVGVYSLISFSGAAFIYIRCLLTSYLGLNASKSFFTSFNTAIFNAPMLFFDSTPIGRILTRASSDLSTLDFDIPYSITFATCLPIEILVIIGAMVLVTWPVLIVAIPAIVASKYVQEYYQASSRELMRINGTTKAPVMNFATETSLGVVTVRAFDMVERFFKNYLKLVDTDASLFFHSNVTTEWLLLRIEALQNLTVITSALLLVLFPQGYVSSGLVGLSLSYALSLTSGYIFWTRMYCNLLNYLISVERIKQFIHLPSQPPAIVKDHQPPSSWPSKGRIDLQALEIRYRPNAPLVLKGITCTFREGSRVGVVGRTGSGKSTLISALFRLVEPASGDILIDGINICSMGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKALEKCQLKETISHLPNLLDSQVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRQEFEACTVITVAHRVPTVIDSDMVMVLSYGKMVEYDEPSRLMDTNSSFSKLVAEYWASCSKNSS 1461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02941 1461 Gene3D - 1200 1451 IPR027417 -
Vimu11g02941 1461 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 610 831 IPR003439 GO:0005524
Vimu11g02941 1461 FunFam ABC transporter C family member 3 1200 1451 - -
Vimu11g02941 1461 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1207 1450 IPR027417 -
Vimu11g02941 1461 CDD ABC_6TM_ABCC_D2 899 1192 IPR044726 GO:0140359
Vimu11g02941 1461 Gene3D - 583 858 IPR027417 -
Vimu11g02941 1461 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1219 1451 IPR003439 GO:0005524
Vimu11g02941 1461 SUPERFAMILY ABC transporter transmembrane region 277 587 IPR036640 GO:0005524|GO:0016020
Vimu11g02941 1461 ProSitePatterns ABC transporters family signature. 733 747 IPR017871 GO:0005524|GO:0016887
Vimu11g02941 1461 FunFam ABC transporter C family member 5 866 1198 - -
Vimu11g02941 1461 CDD ABCC_MRP_domain1 608 808 - -
Vimu11g02941 1461 MobiDBLite consensus disorder prediction 840 857 - -
Vimu11g02941 1461 Pfam ABC transporter 626 760 IPR003439 GO:0005524
Vimu11g02941 1461 CDD ABCC_MRP_domain2 1215 1435 - -
Vimu11g02941 1461 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 906 1166 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu11g02941 1461 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 289 573 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu11g02941 1461 SMART AAA_5 1243 1428 IPR003593 GO:0016887
Vimu11g02941 1461 SMART AAA_5 635 808 IPR003593 GO:0016887
Vimu11g02941 1461 Pfam ABC transporter 1234 1382 IPR003439 GO:0005524
Vimu11g02941 1461 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 211 1453 - -
Vimu11g02941 1461 Gene3D ABC transporter type 1, transmembrane domain 869 1197 IPR036640 GO:0005524|GO:0016020
Vimu11g02941 1461 MobiDBLite consensus disorder prediction 840 860 - -
Vimu11g02941 1461 Gene3D ABC transporter type 1, transmembrane domain 276 582 IPR036640 GO:0005524|GO:0016020
Vimu11g02941 1461 Pfam ABC transporter transmembrane region 904 1162 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu11g02941 1461 Pfam ABC transporter transmembrane region 290 552 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu11g02941 1461 CDD ABC_6TM_ABCC_D1 290 581 IPR044746 GO:0140359
Vimu11g02941 1461 FunFam ABC transporter C family member 10 272 589 - -
Vimu11g02941 1461 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 606 830 IPR027417 -
Vimu11g02941 1461 SUPERFAMILY ABC transporter transmembrane region 891 1198 IPR036640 GO:0005524|GO:0016020
Vimu11g02941 1461 FunFam Multidrug resistance protein associated1 586 851 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02941 Vimu-Chr11 49166759 49173129 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02941 602 837 Calmodulin-binding Proteins AT2G36910 28.679 7.25e-22 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02941 - - gmx:100784827 2354.71