Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02940 ATGATGATGATGATGGAGATTTTTAATGGATACGCTGATGATTTCTCATGGATTTGTCTGAACCATTTTGAGTTCACTTCTTTCTGTTCTCAAAGGAGTACAATAGATACTATAAATCTAATTTTCGTCTGTGTCTTCTACGCTTCCACCATTGTCAGTTTAATCGGAAGAAATTTTATAAATGGAAGTCATACCAAAAGCAGGTTTTTCCTTTTTGTCTCTATCTGTTGTGCGATCACTAGCGTTGTGTTTTACAGTATTGCCCTGTGGAGTCTCATAGCCAAAACTGGGAACTCCATGGCTAACCACCTCAGCTGGTTAGCATGCGTTGTACGAGGATTTGTTTGGACTTCTTTGGCAGTTTCTTTGCATGTTCAGGGACACAAATGGATCAAAATTCTAAACTCTGTCTGGTGGGCATGTTCCTTTGCACTAGTTTCCGCTCTCCAAATAGAAATTCTGTTTAGAAAGCATGTAGTAGAAATTTTCGATGTCCTACTATGGCTCTTACACACGCTTCTTTTCTTCTGTGCCTTCCAAAACCTTGGTTACTTTGTCATTCAAAATGTGCCAAAAAGTTTATCTGAACCGTTCTTAGCTCGGGAAGTTGACACAGAAGAAACAGGACTAGGTCGTGCTTCCTTTCTGAGCAAGTTGACTTTCTCTTGGGTTAACTCCTTGCTCAGTTTGGGTTACTCAAGGCCACTATCTCTTGAAGACATCCCTTCCATTCTTTCTGAAGATAAGGCAGACCTATCCCACAAAAACTTCATGCATGCATGGCAATCCCTTGCGAGGGAGAGAAGCAAGAATAACACCAAGAACTTGGTGTTTTGGTCCATTGTTAGAACTCACTTAAAAGAGAACATATTAATATCTGTTTACACATTGCTCAGAACCGTTGCTGTGACTGTTTCTCCTTTAATACTCTATGCTTTTGTCAACTTTTCAAATAGTAGGGATTCCGGGGAGACAGATTTCAGAGAAGGTCTTACCATAGTGGGTTTTCTTATTCTCTCCAAAGTGGTTGATTCTGTGTCACAGAGACACTGGTTTTTTTGTAGCAGGAGGTCGGGGTTGAAGATGAGATCAGCTCTGATGGTTGCAGTGTACGAAAAACAACTAAAGCTTTCAAACTCAGCAAGGACAAGACACTCAACAGGTGAAATTGTGAATTACATTGCTGTTGATGCGTATCGCATGGGAGAATTTCCATGGTGGTTTCATCTAACATGGGCATGTACATTGCAACTTCTTCTATCTATCAGTGTCCTGTATGGAGTTGTGGGAGTAGGTGCACTTCCTGGTATAATCCCTCTTCTTATATGTGGACTTGTCAATGTACCATTTGCCAAGATCCTACAAAAGTGCATGGCACAGTTCATGATTTCACAGGATGAGCGTCTTAGAGCAACTTCAGAAATTCTAAATAGCATGAAAATCATCAAGTTACAGTCCTGGGAAGACAAATTCAAGAGTTTGGTTGAGAAACTACGTGCGAAAGAGTTCACTTGGCTATCTAAGGCACAAATTTTGAAAGCTTATGGGGCACTTTTATATTGGATGTCTCCTACCATCGTTTCTGCTGTTGTTTTCATCGGTTGTGCTGTTTTCAATAGTGCTCCTTTAAATGCTGGGACCATATTTACAGTTCTTGCAACGTTGAGGAACTTGGCAGAACCTGTTCGAATGATTCCGGAGGCTCTATCTGTTCTGATCCAAGTTAAGGTATCTTTTGATCGTCTCAATACCTTTTTGTTTGACGAAGAACTAGATACCAGTGATGGTAGCAGAAGCTGTAAAAACCGAAGTTCAATTAATGCGGTAGAAATCCAAGCTGGCAACTTCATTTGGGACCATGAATCAGTGTCCCCAACTTTAAGGGATGTGAATTTAGAAATCAAATGGGGACAGAAAGTTGCAGTTTGTGGGCCAGTTGGAGCTGGAAAATCATCTCTTTTGTATGCAATATTAGGAGAGATTCCCAAGATTTCAGGAACTGTTAATGTGTTCGGCAACATAGCATATGTTTCTCAAACTTCTTGGATACAAAGTGGGACGGTTCGAGAAAATATACTATTCGGCAAGCCAATGGAGAAAACAAGATATGAGACTGCCATTAGAGTTTGTGCCTTGGATAAGGATATCAATGATTTTAGTCATGGTGATCTTACAGAAATAGGTCAGCGAGGGATTAACTTGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTCGTGCTGTCTACAATGATGCTGACATTTATCTCCTCGATGACCCTTTCAGTGCAGTTGATGCTCACACTGCTGCTATCCTTTTCAAAGACTGTGTAATGACGGCTCTAAGAGAAAAAACAGTCATTCTAGTGACACATCAAGTGGAGTTTCTCTCGGAAGTTGATACAATCCTGGTAATGGAAGGTGGAAAAGTTACTGAATCAGGAAAGTATGAGAATCTCTTAACAACTGGGACTGCCTTTGAACAACTTGTGAGCGCTCACAAGGATGCAATTACAGAGTTGGATCAGAATAATGAGAACAGAACTCATAGAGAAGAGTCTCAAGGTGTTTATAAAAATCAAAGTGAGGAGGAGATTTCTACGGAGGGTCAACTTGGGATGCAACTTACACAAGAAGAAGAAAAAGAGATTGGTGATGTCGGCTTGAAGGCATTCTGGGATTATATTTCCTTTTCCAGGGGTTCATTGATGCTGTTTTATATAATTTTGGCACAATGTGCTTTTATTGCTTTGCAGACTGCATCAACGGTTTGGCTTGCTTTAGCCATTGATATTCCAAAAATAAGTAGTGCCTTCTTGGTTGGGGTGTACTCCTTAATTTCATTTTCTGGTGCTGCGTTTATATATATAAGGTGTCTCTTGACCTCTTACCTTGGATTAAATGCTTCCAAAGCTTTCTTCACAAGTTTCAATACTGCTATCTTCAATGCTCCTATGCTGTTCTTTGACTCAACCCCCATAGGAAGGATTTTAACAAGAGCTTCATCAGATTTAAGTACTTTGGATTTTGACATACCTTATTCGATCACCTTTGTAACATGTATACCAATTGAAATTTTGGTAATAATTGGTGCAATGGTTTTAGTGACATGGCCAGTTTTCATTGTTGCCATTCCTGCAATAGTTGCATCAAAATATGTTCAGGAATATTATCAAGCCTCGTCAAGGGAATTAATGAGGATCAATGGAACCACGAAAGCTCCTGTGATGAATTTTGCAGCTGAGACATCACTTGGTGTTGTTACTGTGAGAGCATTCGATATGGTAGAAAGATTTTTTAAAAACTACTTAGAGCTTGTGGACACAGACGCAACACTGTTTTTTCATTCTAATGTGGCCACGGAATGGTTACTTTTGAGGATTGAATCACTTCTAAATTTGATAGTCATCACTTCAGCTTTGCTACTTGTTCTATTTCCTCAGGGATACGTGTCCTCAGGTCTTGTGGGACTATCTCTCTCTTACGCATTAGCCTTGACGTTTGCACATATATTTTGGACTCGATGGTATTGCAACTTATTAAACTATCTTATCTCTGTTGAAAGAATCAAGCAATTCGTTCATCTACCGTCAGAGCCTCCTGCTATTGTGAAGGACCACCAACCTCCATCTTCATGGCCTTCCAAAGGCAGGATTGACCTTCAAGCCTTAGAAATTAGATACCGTCCGAATGCTCCATTAGTGCTTAAGGGTATCACTTGCACGTTTAGAGAAGGGAGTAGAGTGGGAGTTGTAGGAAGAACAGGAAGTGGAAAAAGTACACTGATAAGTGCTTTGTTTCGCTTAGTTGAGCCAGCAAGCGGTGACATTCTCATAGATGGGATTAACATATGCTCAATGGGGTTGAAGGATTTGAGAATGAAACTAAGCATCATCCCTCAGGAACCAACTCTCTTCAAGGGCAGCATCAGAACCAACTTGGACCCTTTAGGTTTGTATTCAGATGATGAAATATGGAAGGCTTTAGAGAAATGTCAGCTTAAGGAAACTATCAGCCATCTTCCAAATCTCTTAGACTCTCAGGTGAGTGATGAAGGTGGAAATTGGAGCTTGGGACAAAGGCAACTGTTTTGTCTAGGAAGAGTACTGCTTAAGAGGAACAGAATTCTTGTTCTGGATGAAGCAACTGCCTCCATTGACTCTGCCACAGATGCAATTCTACAAAGAATTATCAGACAAGAGTTTGAAGCATGCACAGTTATTACAGTTGCTCATAGGGTTCCAACTGTAATAGACAGTGATATGGTTATGGTCCTCTCCTATGGGAAAATGGTGGAATATGATGAGCCTTCAAGACTAATGGATACCAACTCTTCATTCTCTAAGCTGGTAGCTGAATATTGGGCCAGCTGCAGCAAGAATTCCTCCTAA 4389 0.4044 MMMMMEIFNGYADDFSWICLNHFEFTSFCSQRSTIDTINLIFVCVFYASTIVSLIGRNFINGSHTKSRFFLFVSICCAITSVVFYSIALWSLIAKTGNSMANHLSWLACVVRGFVWTSLAVSLHVQGHKWIKILNSVWWACSFALVSALQIEILFRKHVVEIFDVLLWLLHTLLFFCAFQNLGYFVIQNVPKSLSEPFLAREVDTEETGLGRASFLSKLTFSWVNSLLSLGYSRPLSLEDIPSILSEDKADLSHKNFMHAWQSLARERSKNNTKNLVFWSIVRTHLKENILISVYTLLRTVAVTVSPLILYAFVNFSNSRDSGETDFREGLTIVGFLILSKVVDSVSQRHWFFCSRRSGLKMRSALMVAVYEKQLKLSNSARTRHSTGEIVNYIAVDAYRMGEFPWWFHLTWACTLQLLLSISVLYGVVGVGALPGIIPLLICGLVNVPFAKILQKCMAQFMISQDERLRATSEILNSMKIIKLQSWEDKFKSLVEKLRAKEFTWLSKAQILKAYGALLYWMSPTIVSAVVFIGCAVFNSAPLNAGTIFTVLATLRNLAEPVRMIPEALSVLIQVKVSFDRLNTFLFDEELDTSDGSRSCKNRSSINAVEIQAGNFIWDHESVSPTLRDVNLEIKWGQKVAVCGPVGAGKSSLLYAILGEIPKISGTVNVFGNIAYVSQTSWIQSGTVRENILFGKPMEKTRYETAIRVCALDKDINDFSHGDLTEIGQRGINLSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFKDCVMTALREKTVILVTHQVEFLSEVDTILVMEGGKVTESGKYENLLTTGTAFEQLVSAHKDAITELDQNNENRTHREESQGVYKNQSEEEISTEGQLGMQLTQEEEKEIGDVGLKAFWDYISFSRGSLMLFYIILAQCAFIALQTASTVWLALAIDIPKISSAFLVGVYSLISFSGAAFIYIRCLLTSYLGLNASKAFFTSFNTAIFNAPMLFFDSTPIGRILTRASSDLSTLDFDIPYSITFVTCIPIEILVIIGAMVLVTWPVFIVAIPAIVASKYVQEYYQASSRELMRINGTTKAPVMNFAAETSLGVVTVRAFDMVERFFKNYLELVDTDATLFFHSNVATEWLLLRIESLLNLIVITSALLLVLFPQGYVSSGLVGLSLSYALALTFAHIFWTRWYCNLLNYLISVERIKQFVHLPSEPPAIVKDHQPPSSWPSKGRIDLQALEIRYRPNAPLVLKGITCTFREGSRVGVVGRTGSGKSTLISALFRLVEPASGDILIDGINICSMGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKALEKCQLKETISHLPNLLDSQVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRQEFEACTVITVAHRVPTVIDSDMVMVLSYGKMVEYDEPSRLMDTNSSFSKLVAEYWASCSKNSS 1462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02940 1462 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1220 1452 IPR003439 GO:0005524
Vimu11g02940 1462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1208 1451 IPR027417 -
Vimu11g02940 1462 MobiDBLite consensus disorder prediction 841 861 - -
Vimu11g02940 1462 FunFam Multidrug resistance protein associated1 587 852 - -
Vimu11g02940 1462 Pfam ABC transporter transmembrane region 905 1166 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu11g02940 1462 Pfam ABC transporter transmembrane region 292 553 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu11g02940 1462 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 290 574 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu11g02940 1462 Pfam ABC transporter 1235 1383 IPR003439 GO:0005524
Vimu11g02940 1462 FunFam ABC transporter C family member 3 1201 1452 - -
Vimu11g02940 1462 SUPERFAMILY ABC transporter transmembrane region 901 1200 IPR036640 GO:0005524|GO:0016020
Vimu11g02940 1462 FunFam ABC transporter C family member 10 273 590 - -
Vimu11g02940 1462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 608 831 IPR027417 -
Vimu11g02940 1462 SMART AAA_5 1244 1429 IPR003593 GO:0016887
Vimu11g02940 1462 SMART AAA_5 636 809 IPR003593 GO:0016887
Vimu11g02940 1462 CDD ABC_6TM_ABCC_D1 291 582 IPR044746 GO:0140359
Vimu11g02940 1462 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 212 1454 - -
Vimu11g02940 1462 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 907 1168 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu11g02940 1462 CDD ABC_6TM_ABCC_D2 900 1193 IPR044726 GO:0140359
Vimu11g02940 1462 Gene3D ABC transporter type 1, transmembrane domain 262 590 IPR036640 GO:0005524|GO:0016020
Vimu11g02940 1462 Gene3D ABC transporter type 1, transmembrane domain 870 1199 IPR036640 GO:0005524|GO:0016020
Vimu11g02940 1462 Gene3D - 1201 1452 IPR027417 -
Vimu11g02940 1462 Pfam ABC transporter 627 761 IPR003439 GO:0005524
Vimu11g02940 1462 FunFam ABC transporter C family member 5 867 1199 - -
Vimu11g02940 1462 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 611 832 IPR003439 GO:0005524
Vimu11g02940 1462 Gene3D - 616 863 IPR027417 -
Vimu11g02940 1462 SUPERFAMILY ABC transporter transmembrane region 278 588 IPR036640 GO:0005524|GO:0016020
Vimu11g02940 1462 CDD ABCC_MRP_domain1 609 809 - -
Vimu11g02940 1462 MobiDBLite consensus disorder prediction 841 858 - -
Vimu11g02940 1462 ProSitePatterns ABC transporters family signature. 734 748 IPR017871 GO:0005524|GO:0016887
Vimu11g02940 1462 CDD ABCC_MRP_domain2 1216 1436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02940 Vimu-Chr11 49148694 49154933 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02940 609 838 Calmodulin-binding Proteins AT2G36910 28.400 8.97e-22 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02940 - - gmx:100784827 2377.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02940 11 49148694 49154933 Vimu11g02940 11 49148694 49154933 ECH