Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02938 ATGGCTTTCAGAAGCACAATAGGACATACTAGTCTTCAGATGCAACTTTGGAAAATGAGAGATAGTGGCCCTAATATGCAGATCATGTCTTTAAATAACTTCTCCTGCAATTGCCATGGAGATTTCAGTTTGGCTTCCTTTTCAAGCCAGAGGTGCATAATAGACATTGTCAACATGTTTTTCCTGTGTATCTTTTGTGTATCATTGCTCTCCAATCTGATGAAGAAAAGACCTGCAAATGCAAGTGGTGGTTTCAGAAAGAGATTGCTTCCTGTAGTTACTTCATTCTGTTGTACTCTTTTAAGCATTGCATATTTTGTTGATGGTTTGTGGAATCTCATGACCAAAACCACAGGCTTCAATCAGCTGAACTTGTTGGTTTGCATTGTGAGAGGACTGGTTTGGATATCTATAGCAGCTTCACTGTTTGTTCAAAGATTTCAATGGATAAAAAAACTATGCTCTATTTGGTGGGTGTTTTCATGCACATTGGTTTCATTACTCAATGCTGAAATTCTGCTGAAAGGGCGTAGCTTTCAAATGTTTGATATGGCAATATGGGCAGTGCACATCCTAACTGTTCTCTGTGTCTTCCAAAATCATGGCTACTTTGTCCCACAAGAAATCCCTGGTGCCAGTTTATGTGAGCCTCTGTTAGTTCATAAGGAAATGCATAAAGAAACAGGACTTGGCCATGCCTCCTTTCTCAGCAGATTCACTTTCTCTTGGATGAATGCTTTGCTCAGTTTGGGTTACTCAAAGCCATTAGCACGTGATGACATCCCTTCTCTTAATTCTGAAGATAAAGCTGATTTTGCATACCAAAAGTTTGCACATGCATGGCTTTCCCTTTTGAGAAGCAGTAAAAGTTCCAAAAACTTGGTCATGTGGTCCGTAGCCCGAGTTTACATGAAAGAAAATATCTCCATAGCCATTTGCGCATTTCTGAGGACAATTTGTGCTGTTGTTTCTCCTTTACTTGTTTATGTTTTTGTAAACTATTCCAGTTCCACTGAGGAAGACTTAAAACAAGGAATGGCCATAATGGGGTGTCTTATATTTGCCAAGGTGGTTGAGTCTGTGTCTCAAAGACATTGGTCTTTTAACTCAAGGAGGTTAGGAATGAAAATGAGATCTTCTTTAATGGCTGCAGTGTATCAAAAGCAATTAAAGCTCTCAGTTTTGGGTAGGAGAAGACATTCAACTGGTGAGATTGTTAATTACATTGCTGTTGATGCATATCGAATGGGTGAATTTCCATGGTGGTTTCATACTTTGTTGTTTTCTACACTGCAAGTTTTTCTGGCTCTTGGTGTCCTTTTTGGTGTTGTGGGTATAGGTGCACTTCCTGGTTTAGTGCCACTTCTCATTTGTGGATTTCTCAACGTACCGTTTGCAAAGATCCTTCAAAAATATAGGTCGGAGTTTATGATTGCACAAGATGAGCGTCTGAGGTCAACTTCAGAGATTCTTAGTAGTATGAAAATCATAAAGCTACAATCCTGGGAGGATAACTTCAAGAAGTTAGTTGAATCCCTTCGTGCTAAAGAGTTAAAATGTTTGGCTGAAGTACACTTTATGAGAGCGTGTGGAACATTTATATATTGGCTCTCTCCGACCATCGTTTCTTCAGTTATCTTAATGGGATGTGCGCTTTTTCAGAGTGCCCCTTTGGATGCTGGAACTATCTTCACAGTTCTTGCAACATTGAGAAGCATGGGAGAACCTGTCATATTGATTCCAGAAGCACTTTCTGTTATGATCCAAGTTAAGGTTTCCTTTGATCGTCTCAACACCTTTTTGCTTGATGACGAGATAAAAGATGATGACATTGGAAGAACATCAAAAGATTCTTGCAGCAAGGGAGTTGAAATTCTAGCAGGCAGCTTCAGTTGGGATCTGCAATCATTGCCTCTCACTTTGAGAGAAGTGAATTTTGAGATCAAGAAGGAGCAGACAGTAGCAGTTTGTGGTCCAGTTGGCGCTGGAAAAACATCTCTCCTGTATGCAATACTCGGAGAGATACCCAAAATTTCAGGAACTGTTAGAGTAGAGGGAACACTTGCCTACGTTTCCCAAATTCCTTGGATCCAAAGTGGTACAGTTCGTGATAATATTCTATATGGAAAAGCAATGGACCAAACCAGGTATGAATATACCATTAAGGTCTGTGCCTTGGATAAGGATATTGATGGATTTAGCCACGGTGATCTTACAGAAATAGGTCAGAGAGGGATTAACTTGAGTGGTGGACAAAAGCAAAGGATTCAACTAGCTCGTGCAGTCTATAATGATGCTGATATCTATCTCTTAGATGACCCTTTTAGTGCTGTAGATGTTCATACTGCCTCTATTCTGTTTCATGATTGTGTCAGGACTGCTTTAAGAACGAAAACAGTTATTCTTGTGACTCATCAAGTTGAATTTCTCTCAGAAGTTGATAAAATCCTGGTAATGGAAGGAGGAAAAATTAGTCAAACAGGTAGCTATGAAGATCTGTTGACTGCTGGAACAGCCTTTGAGCAGCTTCTGAGTGCTCATAGAGAGGCAATTACAGGAATAGAAACAAACAGTGCAAGCAAAAGAGAAGTTCAAAATGTGGTTACAGTTCAGCCTGAGGATTCTCATATTTCTAATCTCGCTAAATGTGGAGGTGATGGAGAAATTTCTACCGAGATTCAACTTACACAAGAGGAAGAAAAGGAGAGTGGTGATGTTGGGTGGCAGCCATTCTGTGACTACATTTTGTTCCCTAAGGGATCTTTGCTTCTATGTTTGAGCATATTAGCACAGTTGACTTTTGTAGGTTTGCAGACTGCATCAACTTCTTGGCTTGCTATTGCCGATGAGATGTCAAAAGTAACTAGCAGCATCTTAGTTGGAGTTTATAGTGTGATTTCCATTTTAAGCATTGTTTTTGTATATCTGAGATCTTACTTTGCTGCACATCTTGGTCTAAAAGCTTCTAAAGCATTCTTCTCTGCTTTCACTGATTCTATCTTTAATGCTCCTATGTTGTTCTTTGATTCAACCCCAGTAGGGAGGATTTTTACCCGAGCTTCATCAGATTTGAGTATTTTAGATTTCGATATACCTTTTTCCACCATCTTTGTGATAGCTGAAGTAACAGAGCTTCTTACAATGATTGTGATAATGGTTTCGGTCACATGGCAAGTGTTCATTGTTGCAATTCTAGCCATGGTGGCTACAAAATATATCCAGGGCTATTATCAAGCTTCTGCAAGAGAAATTATACGAATCAATGGAACTACAAAAGCCCCTCTTATGAATTTTACGTCTGAGTCATATCTTGGTGTGGTTACTATAAGAGCTTTCAACATGGCTGACAGATTTTTCAAGAACTACCTTAACCTTGTTGACACAGATGCCACGATGTTCTTTCATTCCAATGCTGCCATCGAATGGTTAATTCTAAGGATTCAAGCACTTCAGAATTTGACAGTCTTCACTGCAGCTTTCCTGCTTGTTCTACTTCCAAAGGGATATGTGGCCCCTGGCCTTGTTGGACTTTCTCTGTCTTACGGTTTTTCACTGACAGGAACAGTAGTTTATCTGACTAGAATGTTTTGCAACTTATCGAACTATGTGATCTCTGTTGAAAGAATCAAGCAATTCATTCACATACCAGCAGAACCTAGTGCAATTGTAGAGGACAATAGACCACCACCTTCTTGGCCTTCTAAAGGTCGAATAGATCTTCAATCTCTAGAGATCAGATATCGTCCAAATTCTCCATTAGTTCTGAAGGGCATCTCTTGCACGTTTCAAGAAGGGAGTAGAGTTGGAGTTGTGGGAAGAACAGGAAGTGGAAAAACTACACTTATAAGTGCTTTGTTTCGCATAGTTGAGCCTACTAGAGGAGACATTCTTATAGATGGGATTAATATATGCTCAATTGGGTTAAAGGATTTAAGAATAAAGCTAAGCATCATTCCTCAAGAACCAACTCTTTTCAAGGGTAGCATTCGAAAAAACTTGGACCCTCTAGGCCTGTACTCAGATGATGAAATATGGAAGGCTTTAGAGAAATGTCAGCTCAAGGCAACAATTAGTAGTCTACCATATCTCTTGGATACTTCTGCATATCTGAAACAGTCTAATCTGACTAATTTCAAAGTGAGTGATGAAGGGGAAAACTGGAGTGTTGGGCAGCGCCAACTCATGTGTCTTGGAAGGGTCCTTCTCAGGAAGAACAGAATTCTTGTTCTGGATGAAGCTACTGCCTCCATTGATTCTGCCACAGATGGTGTTCTACAACGAATCATCAGACAAGAATTTTCAGAATGCACAGTTATAACTGTGGCTCACAGAGTTCCCTCTGTGATAGACAGTGACATGATCATGGTCCTATCTTATGGGAAACTGGTGGAGTATGACAAACCTTCAAAGCTTATGGATACTAACTCTTCCTTCTCTAAGCTGGTAGCTGAATATTGGTCCCACTCCAATGGAAATTTGTCCACAACAGATTAG 4494 0.3988 MAFRSTIGHTSLQMQLWKMRDSGPNMQIMSLNNFSCNCHGDFSLASFSSQRCIIDIVNMFFLCIFCVSLLSNLMKKRPANASGGFRKRLLPVVTSFCCTLLSIAYFVDGLWNLMTKTTGFNQLNLLVCIVRGLVWISIAASLFVQRFQWIKKLCSIWWVFSCTLVSLLNAEILLKGRSFQMFDMAIWAVHILTVLCVFQNHGYFVPQEIPGASLCEPLLVHKEMHKETGLGHASFLSRFTFSWMNALLSLGYSKPLARDDIPSLNSEDKADFAYQKFAHAWLSLLRSSKSSKNLVMWSVARVYMKENISIAICAFLRTICAVVSPLLVYVFVNYSSSTEEDLKQGMAIMGCLIFAKVVESVSQRHWSFNSRRLGMKMRSSLMAAVYQKQLKLSVLGRRRHSTGEIVNYIAVDAYRMGEFPWWFHTLLFSTLQVFLALGVLFGVVGIGALPGLVPLLICGFLNVPFAKILQKYRSEFMIAQDERLRSTSEILSSMKIIKLQSWEDNFKKLVESLRAKELKCLAEVHFMRACGTFIYWLSPTIVSSVILMGCALFQSAPLDAGTIFTVLATLRSMGEPVILIPEALSVMIQVKVSFDRLNTFLLDDEIKDDDIGRTSKDSCSKGVEILAGSFSWDLQSLPLTLREVNFEIKKEQTVAVCGPVGAGKTSLLYAILGEIPKISGTVRVEGTLAYVSQIPWIQSGTVRDNILYGKAMDQTRYEYTIKVCALDKDIDGFSHGDLTEIGQRGINLSGGQKQRIQLARAVYNDADIYLLDDPFSAVDVHTASILFHDCVRTALRTKTVILVTHQVEFLSEVDKILVMEGGKISQTGSYEDLLTAGTAFEQLLSAHREAITGIETNSASKREVQNVVTVQPEDSHISNLAKCGGDGEISTEIQLTQEEEKESGDVGWQPFCDYILFPKGSLLLCLSILAQLTFVGLQTASTSWLAIADEMSKVTSSILVGVYSVISILSIVFVYLRSYFAAHLGLKASKAFFSAFTDSIFNAPMLFFDSTPVGRIFTRASSDLSILDFDIPFSTIFVIAEVTELLTMIVIMVSVTWQVFIVAILAMVATKYIQGYYQASAREIIRINGTTKAPLMNFTSESYLGVVTIRAFNMADRFFKNYLNLVDTDATMFFHSNAAIEWLILRIQALQNLTVFTAAFLLVLLPKGYVAPGLVGLSLSYGFSLTGTVVYLTRMFCNLSNYVISVERIKQFIHIPAEPSAIVEDNRPPPSWPSKGRIDLQSLEIRYRPNSPLVLKGISCTFQEGSRVGVVGRTGSGKTTLISALFRIVEPTRGDILIDGINICSIGLKDLRIKLSIIPQEPTLFKGSIRKNLDPLGLYSDDEIWKALEKCQLKATISSLPYLLDTSAYLKQSNLTNFKVSDEGENWSVGQRQLMCLGRVLLRKNRILVLDEATASIDSATDGVLQRIIRQEFSECTVITVAHRVPSVIDSDMIMVLSYGKLVEYDKPSKLMDTNSSFSKLVAEYWSHSNGNLSTTD 1497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02938 1497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 628 845 IPR027417 -
Vimu11g02938 1497 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1240 1484 IPR003439 GO:0005524
Vimu11g02938 1497 Gene3D - 1221 1484 IPR027417 -
Vimu11g02938 1497 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 606 846 IPR003439 GO:0005524
Vimu11g02938 1497 SMART AAA_5 1264 1469 IPR003593 GO:0016887
Vimu11g02938 1497 SMART AAA_5 650 823 IPR003593 GO:0016887
Vimu11g02938 1497 CDD ABC_6TM_ABCC_D2 920 1213 IPR044726 GO:0140359
Vimu11g02938 1497 CDD ABCC_MRP_domain1 623 823 - -
Vimu11g02938 1497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1227 1483 IPR027417 -
Vimu11g02938 1497 ProSitePatterns ABC transporters family signature. 748 762 IPR017871 GO:0005524|GO:0016887
Vimu11g02938 1497 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 310 589 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu11g02938 1497 Gene3D ABC transporter type 1, transmembrane domain 890 1219 IPR036640 GO:0005524|GO:0016020
Vimu11g02938 1497 CDD ABC_6TM_ABCC_D1 310 597 IPR044746 GO:0140359
Vimu11g02938 1497 FunFam Multidrug resistance protein associated1 602 866 - -
Vimu11g02938 1497 FunFam ABC transporter C family member 10 291 605 - -
Vimu11g02938 1497 SUPERFAMILY ABC transporter transmembrane region 296 605 IPR036640 GO:0005524|GO:0016020
Vimu11g02938 1497 Coils Coil 499 519 - -
Vimu11g02938 1497 Pfam ABC transporter 1255 1415 IPR003439 GO:0005524
Vimu11g02938 1497 SUPERFAMILY ABC transporter transmembrane region 918 1218 IPR036640 GO:0005524|GO:0016020
Vimu11g02938 1497 Gene3D ABC transporter type 1, transmembrane domain 295 599 IPR036640 GO:0005524|GO:0016020
Vimu11g02938 1497 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 232 1486 - -
Vimu11g02938 1497 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 920 1201 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu11g02938 1497 Pfam ABC transporter transmembrane region 310 569 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu11g02938 1497 Pfam ABC transporter transmembrane region 935 1174 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu11g02938 1497 FunFam ABC transporter C family member 3 1221 1484 - -
Vimu11g02938 1497 Pfam ABC transporter 641 775 IPR003439 GO:0005524
Vimu11g02938 1497 FunFam ABC transporter C family member 5 888 1219 - -
Vimu11g02938 1497 Gene3D - 600 870 IPR027417 -
Vimu11g02938 1497 CDD ABCC_MRP_domain2 1236 1468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02938 Vimu-Chr11 49129953 49135700 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02938 617 869 Calmodulin-binding Proteins AT2G36910 26.740 8.45e-22 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02938 - - gmx:100813711 2402.09