Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02936 ATGGAGTTCACGGAGGCCAAGAGGCTGTGCGAAGAGGTGCTCGATGCCGAGAGTGCCGGCAGGGACTCGAACGAGATGAGCATAGATGGGGAGCACCGACGGAGCTATCATTTCGATGTAGTCTCTCCTGAGTTTGATGCACTTTTGGCAGAAGAAGGAGTAAAGGACTCGCCGCCACGCAACTTGGATGGTTCGATTGCCTCCTCAGGCATGAAGAATTCATTCTTAGTCTTGGTTACCTTATTGTTGACTGTCAATGCTAGTATTCCCCTTAAGTGGGACCGAGGACTGTTGGGGGATGAAAAAGACTTGAAGATCTTGAGGTATGATATGGTCGTAGCTTTAGACGGAAGTGGTAATTTCACTACCATTTCTAAAGTCATAGAAGTTGCTTCTGTGTTGAGTTCAAGGAGAATTATTATAAAAATAAAAGGAGGTATATACCAAGAGAATCTGATATTTCCTCCTAACAGGACTACTCTCTTTTTGGTTGGGATGGAAGAGGCATCGCTATCACCAGAGTATAATAACTTTGGACCTAGTGCTCAAACCTCCAATAATAGAGTCACATGGAAGGGATTCAAAGTGATCACTCATTCTGATGAGGCTGAGCCTTTTACTCGTAACAAGCACAATGATTTTATTGATAGCAATGATTATGGAATTCGGTCTTTTGAAAATAATTTCAAGTCATGTCAAAATGTAAAGACTTCGGACACCAAACTGGACGAGGAAAACTTAATTTTGATTTCAGCTGATGTTTCTTGCAATGATGAAAATCTTAAGACTGTGGAAATGGAAGCTTCTCTCTCGCAGATGCCTCATTTAACGAAGGTGGTAGATGTGAACCTGGCAGATGGAACGGTTGAGAAAGGGAAAGATGAAATACTGGTTCCAAGCCCTCCTATCCCAGAAGTAGCTACTCTGTTGCACTCCCTGCAAGACGCTTCCAAGGGTAACTTAGATGGTCACGGTCACGATAACTGCTATCATTCAGTACTTGAAGTAGCTCAGAGCGGTCTTACCAAATCAGGTATTGTCATTTCGTCTGGGAAGAAAAGAAAGGGTGTTGAGGTGCTGGTCAATGGAGACAACATAGATAAAATAGGTAGAATTGACAGAAGTCCAGAGGTTCATACACGTGGGAAAGGTGACGTACAGTTAGAGCAAACATATTCTTTGAGAAGAGAAAAAGAGAAGCTTGGAGATCAGACTTGGAATGATGAGGATCTTGTATGGCTACTAATTGAGGAAACAAGAATGTTGCTGTATGATATAGCGTATTATAAAGCAAAATTACAATTATTGAATGTGAAGCGTGACAAGTTACTGAAAAAGTTACAACAGTTAATCTCTGGGCTTCAAGAATGTGATAAGATAAAATTAAATTTCAACATCCCTTCTTCATCTAAAAGCGGGACAATGGACACTCAAGCTGATTATGGTCATATTCATTCAAAATTTTATTCCCAGGGAAAATGTCAGCTTTCTTGTGGAGAAGTATTGGAAACGAAGCAGGATCTTGAAACCTTGGATTCAAGAGCAAAAGCCCTAAGTGAACTCTTATATGAACACTGCAAGATGGAAGGGGATCAAAGCTATACCAAGATCATGAAAGCTGTTTCTGATTATTTGCAGAAGAGAATGACTTGGAAGTCTTTACTCCAGAATATGAAGTTGTGGGAAATTGAAGATTTTGAGCGCACGGATGATTGTTGCAGGGTTGGTCTCAATTATTATGATTATATAACCCAAAGGTTCACAGCAAATACTGGTCAATCTAACATAATATTATCAAATAGCTTGAATAATGTGACGATCGGAAAGAACTTCCCAAACTTGGATGCTTTTTCTGCATTTGTGTTTGTCTTAAATCCTCACGCAACCAAGAAAGGCAACGGTTCAAGCTGTATGGCACGAGAAACACAGATAACAAGTTCACTACTAAGAAATTTGCTAGATGTGGTGGAGGAGGTTCAATCAGCTCGGACAGTGCTTAAAAACTTGGTCGAGGCAAAGTTCTATTCTCATTCAGTTCAGCACCTTGATTTGCAGCTGTCTTTCATTGATTTCTACAGTGGTAGGAAGACGCTGATTGATTTGAAAAATGATTTGAGCAGTGGGGTCTATCCTGCTGAGGTCCTTCCATCTCAAATATATGATCCATCTAGATCTAGTGGGGAACAAAAGTCTCTGCCATCATCGCTTGTAGATGAGATAAGAACTACAACCGAGAGTGTGAGAGTTGGATACTCAAGAATTATTAGGCTTTGTAGAAGTATTTCCCAGGCAGTTCATGCTTGCAATAAAAGCAAGTGA 2319 0.4062 MEFTEAKRLCEEVLDAESAGRDSNEMSIDGEHRRSYHFDVVSPEFDALLAEEGVKDSPPRNLDGSIASSGMKNSFLVLVTLLLTVNASIPLKWDRGLLGDEKDLKILRYDMVVALDGSGNFTTISKVIEVASVLSSRRIIIKIKGGIYQENLIFPPNRTTLFLVGMEEASLSPEYNNFGPSAQTSNNRVTWKGFKVITHSDEAEPFTRNKHNDFIDSNDYGIRSFENNFKSCQNVKTSDTKLDEENLILISADVSCNDENLKTVEMEASLSQMPHLTKVVDVNLADGTVEKGKDEILVPSPPIPEVATLLHSLQDASKGNLDGHGHDNCYHSVLEVAQSGLTKSGIVISSGKKRKGVEVLVNGDNIDKIGRIDRSPEVHTRGKGDVQLEQTYSLRREKEKLGDQTWNDEDLVWLLIEETRMLLYDIAYYKAKLQLLNVKRDKLLKKLQQLISGLQECDKIKLNFNIPSSSKSGTMDTQADYGHIHSKFYSQGKCQLSCGEVLETKQDLETLDSRAKALSELLYEHCKMEGDQSYTKIMKAVSDYLQKRMTWKSLLQNMKLWEIEDFERTDDCCRVGLNYYDYITQRFTANTGQSNIILSNSLNNVTIGKNFPNLDAFSAFVFVLNPHATKKGNGSSCMARETQITSSLLRNLLDVVEEVQSARTVLKNLVEAKFYSHSVQHLDLQLSFIDFYSGRKTLIDLKNDLSSGVYPAEVLPSQIYDPSRSSGEQKSLPSSLVDEIRTTTESVRVGYSRIIRLCRSISQAVHACNKSK 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02936 772 PANTHER OS06G0608100 PROTEIN 417 770 - -
Vimu11g02936 772 Pfam Pectinesterase 110 165 IPR000070 GO:0030599|GO:0042545
Vimu11g02936 772 SUPERFAMILY Pectin lyase-like 109 165 IPR011050 -
Vimu11g02936 772 Gene3D - 93 231 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02936 Vimu-Chr11 49119544 49128039 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02936 101 165 Carbohydrate Esterase AT4G02300 41.538 5.16e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02936 - - gmx:100789038 479.559