Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02930 ATGCAAGATCCGACAGCATTTCAAGGTTTGAAGCACCCTCAGTTTCCCGAACAAGAACAACTCAAATGCCCGCGTTGTGACTCCACGAACACCAAATTCTGCTACTACAACAACTACAACCTCTCTCAGCCGCGTCACTTTTGCAAGAACTGCAGAAGGTACTGGACAAAGGGTGGTGCTTTGAGAAACATCCCTGTCGGGGGTGGAAGCAGAAAGAGCACAAAACGTTCGTCAACCTCAAAACGCTCCTCTGCGCCGGCTTCCTCTGCGGTTTCTGAGGCTGACCCGAGCCGGATTTGCACCAACCCGGTTGAGCAAGACAGTGGGGCGCTCAACATTGGTGGCACCTTCAGTTCCCTCTTGGCTTCATCTGGCCACTTTGGAACCCTCTTGGAGGGTCTGAATCCAACTGGGTCAGGTCTCAAAATGGGTGAATTTGGGCAGGGTGTGAGTTCTGACCGGGGTTTGAATTCGGATTCGGGTTCAAACCCGGGTTTGCAGCTTCAGAGTAATGGGAGTTCAGACGGTTTTCTGGGTATGCAGAATGGGGAATCAACCTGTTGGAATGGTGGTCATGGTTGGTCTGATCTTGCAATATACACACCTCGCCCGAGTTTTCAATAG 624 0.5144 MQDPTAFQGLKHPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKSTKRSSTSKRSSAPASSAVSEADPSRICTNPVEQDSGALNIGGTFSSLLASSGHFGTLLEGLNPTGSGLKMGEFGQGVSSDRGLNSDSGSNPGLQLQSNGSSDGFLGMQNGESTCWNGGHGWSDLAIYTPRPSFQ 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02930 207 Pfam Dof domain, zinc finger 19 75 IPR003851 GO:0003677|GO:0006355
Vimu11g02930 207 MobiDBLite consensus disorder prediction 142 177 - -
Vimu11g02930 207 MobiDBLite consensus disorder prediction 62 105 - -
Vimu11g02930 207 ProSiteProfiles Zinc finger Dof-type profile. 21 75 IPR003851 GO:0003677|GO:0006355
Vimu11g02930 207 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 149 IPR045174 GO:0003700|GO:0006355
Vimu11g02930 207 ProSitePatterns Zinc finger Dof-type signature. 23 59 IPR003851 GO:0003677|GO:0006355
Vimu11g02930 207 MobiDBLite consensus disorder prediction 151 177 - -
Vimu11g02930 207 MobiDBLite consensus disorder prediction 70 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02930 Vimu-Chr11 49064082 49064705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02930 12 131 C2C2-Dof Transcription Factor Family AT1G51700 58.088 3.83e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vimu11g02930 zf-Dof 2.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02930 - - gmx:100790822 331.257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02930 11 49064082 49064705 Vimu11g02930 11 49064082 49064705 ECH
Vimu4g00302 4 2243449 2244066 Vimu11g02930 11 49064082 49064705 PCT