Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02929 CAGTTTGTCTACAAGTGTGAACTGGTAACAAGGATCAATTTCTCCTCCAAGTTTCTACTAGATTTTTTCTTGAAGCAAACATCTATGGATGGTTTGAGTTGGGATACCTCTCAACTTGAAGCAAACACACCAATCCTGTGGAGTACTATTCAGCCACCACCAGATTTTGAAGGAGGCTACTCCATGCCCAATGTTGTCAATCAAATACAAGATTTGCAGAAGGCTCAAACAGGTCATGCAGATTCAAATTCTGAAAGAGTGATTTATCAGTCAGCAGATGCTACAACCGCTTCTTCAGAGATAATGGATGAGATGCAAAGGCAAAACACAAATCTTTTACAGCATGCACCAACAATGATGCCGGTGAAATCAGGAACTGGAGCCAGTTGGGGAGAAGCTTTCACATCTCAATCATACCCGTCTCTGTCGGTCAATGGATCTCAAAGGATAAACCTGATTAGCAACTACATGCCAGATTTCAGCATGGCCCACCAACAACAGCAGCAGCAACAACTTGTCAATGGCTCACAAAATGGGAAGGGTGCTTGCTCTCTTGAGTCTTTTGACTGCTTGATTTCAGCTACCAATAGCAACACAGACACATCTGTTGAAGATGATGGCATCTCGATGATTTTATCTGACTGTAGAAACTTGTGGAACTTCAGCTATGGCAGTGCAGCTTCCACTGGTGAATCTGAGAGTAATGCATCGAATGGTAGAAAGGAAGACATGAAGTGTCCGGTGAATGAAGTTGATGAAACAGTTTCTCAAAGCTCCTTGGATCGAGGAAAAACAGTACAATCAAAGGCTAATTGTTCAAAGAGGAGCCATGAGGAAACTGAAATGATCAAAGTTGGTGCCACTGGCAGTGGTTCCTGCTTCAGTATTGTGCAGAATTCTTCTTCTGTTGAGGAAGGTGGATTCAGACTTATCTCAGATGATTCATCAAAAAGCAAGAAACCCAGATGGGAGAAGAGTTCCTCTTCAAATAACATCAATTTCCAGCAACCAAATTCATCCATGTCTTCATCCATTGAGGAACCTGACCCAGAGGCCATTGCACAAATGAAGGAAATGATATATAGGGCTGCAGCTTTTAGGCCTGTGAACTTTGGCTTGGATGCAGCTGAAAAACCAAAGAGGAAGAATGTGAGAATATCAACCGATCCACAAACTGTGGCTGCAAGGCATAGAAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGCTTGTGCCTGGGGGAAGCAAAATGGACACAGCATCAATGCTTGATGAGGCTGCAAACTACCTCAAATTTCTCAGGTCACAAGTCAAGGCACTGGAATGTCTAGGAAACAAAGTTGAAGCAATGAATTGTCCTCCTACAAGCATTGCCTTCTCTTTCAACCCTTCTTTTCCCATGCAAACATCTCTCAGTCAAATCCATCATTCCCAGGGTTGA 1446 0.4302 QFVYKCELVTRINFSSKFLLDFFLKQTSMDGLSWDTSQLEANTPILWSTIQPPPDFEGGYSMPNVVNQIQDLQKAQTGHADSNSERVIYQSADATTASSEIMDEMQRQNTNLLQHAPTMMPVKSGTGASWGEAFTSQSYPSLSVNGSQRINLISNYMPDFSMAHQQQQQQQLVNGSQNGKGACSLESFDCLISATNSNTDTSVEDDGISMILSDCRNLWNFSYGSAASTGESESNASNGRKEDMKCPVNEVDETVSQSSLDRGKTVQSKANCSKRSHEETEMIKVGATGSGSCFSIVQNSSSVEEGGFRLISDDSSKSKKPRWEKSSSSNNINFQQPNSSMSSSIEEPDPEAIAQMKEMIYRAAAFRPVNFGLDAAEKPKRKNVRISTDPQTVAARHRRERISERIRVLQKLVPGGSKMDTASMLDEAANYLKFLRSQVKALECLGNKVEAMNCPPTSIAFSFNPSFPMQTSLSQIHHSQG 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02929 481 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 391 445 IPR036638 GO:0046983
Vimu11g02929 481 MobiDBLite consensus disorder prediction 253 270 - -
Vimu11g02929 481 Pfam Helix-loop-helix DNA-binding domain 396 435 IPR011598 GO:0046983
Vimu11g02929 481 MobiDBLite consensus disorder prediction 308 348 - -
Vimu11g02929 481 MobiDBLite consensus disorder prediction 325 346 - -
Vimu11g02929 481 Gene3D - 391 445 IPR036638 GO:0046983
Vimu11g02929 481 SMART finulus 392 441 IPR011598 GO:0046983
Vimu11g02929 481 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 386 435 IPR011598 GO:0046983
Vimu11g02929 481 MobiDBLite consensus disorder prediction 310 324 - -
Vimu11g02929 481 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 180 476 IPR045843 GO:0003700|GO:0006355
Vimu11g02929 481 MobiDBLite consensus disorder prediction 253 279 - -
Vimu11g02929 481 MobiDBLite consensus disorder prediction 227 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02929 Vimu-Chr11 49049988 49051537 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02929 125 480 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 47.861 9.59e-89 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu11g02929 HLH 3.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02929 - - vra:106773034 917.531