Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02911 ATGGAAAGCAATGGTGAAGCAGAAAACAGCAGTGGAAAAGTTTGTTCTCCATCATCAGAAAAGCCATCACCAATGAAGAAGAAGATGAAGAAGAACAAGAAGAAGAAGCTTTGTTGCAGATATTGTAACAAGAAGTTCTGTAGTTACCAAGCCTTGGGTGGACATCAGAATGCACACAAGGCAGAAAGAGCAGTAGCAGAGAGAGAGAAGATTCTGAACATGGCTTCTGCATATGACAGAAGTTCATATGTTGATTCAAACAACTGTTATGGATTGAGAGGAAAATCATGTGGGGTGTCAGCAATTTCCATGACTCATTTCAAGCCACATTTTGGACTCAAACATGATCATCAATGGTCAGGACAGTATACTTTGGATTATGTTCAAGACACCATTCAAAAGTTGCAGACTTTGAATGCTGAAGGAAGTGGATTTCATCAACATCACACATCATATCAACCTTTAACTTTTTCTATACTTGGAGGTGAAAAACCAAATTCAGGGTCATTGTTTAATACTACTGATAAGGAAAAAGATTCTGCAGTGATATCTCATAATGAAATCACAATGATGCATGATTTGAATGTCAAGTATTCAAATTCTGATGAAGAAAATGGTTTTTCTGCAATGGCTGCTGATAATGGAGTGGTGGAGGAACTTGATTTGACCCTCAAGATTGCCAATGGAGTGATGGAGGAACTTGATTTGACTCTCAAGATTTGA 723 0.379 MESNGEAENSSGKVCSPSSEKPSPMKKKMKKNKKKKLCCRYCNKKFCSYQALGGHQNAHKAERAVAEREKILNMASAYDRSSYVDSNNCYGLRGKSCGVSAISMTHFKPHFGLKHDHQWSGQYTLDYVQDTIQKLQTLNAEGSGFHQHHTSYQPLTFSILGGEKPNSGSLFNTTDKEKDSAVISHNEITMMHDLNVKYSNSDEENGFSAMAADNGVVEELDLTLKIANGVMEELDLTLKI 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02911 240 MobiDBLite consensus disorder prediction 1 29 - -
Vimu11g02911 240 MobiDBLite consensus disorder prediction 1 18 - -
Vimu11g02911 240 SUPERFAMILY beta-beta-alpha zinc fingers 34 64 IPR036236 -
Vimu11g02911 240 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 18 225 IPR044246 GO:0009788
Vimu11g02911 240 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Vimu11g02911 240 ProSiteProfiles Zinc finger C2H2 type domain profile. 37 64 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02911 Vimu-Chr11 48935950 48936672 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02911 35 97 C2H2 Transcription Factor Family AT5G14010 44.444 2.07e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02911 - - vum:124829785 365.925