LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu11g02908	ATGTTGAGAGTCGCGATATCTGCTCTGCGGAGGCGAAGCAGAGAACTTAAAAAGGCGTTGCAGGATTCAACGGGTATAAGTGAGGGTGGCGCTGCGGAATTTACTGGCGTGGGCGAGGGTTTTGAAGAGGGCTTCGAAGACGAGAGGAGAAGCATTGCAGATAGGGTAGGAGTAGAGGATTTTTGTGAGGATGGTTTGGATGGTTTTGAATTGGCGATGTGTGGCGAGGGTGTGGAGGAGGAACGAGAGGGTTTCGAGGGTGTGCGTGGATGGGTGGTGTTGGAGAAGCCATTGGGAAAGTTTGAGGGACAATACGTGGTCGTTTTGAAGGTTGAGGAAGAGGTGTTTGAGACGAAAGGGTGTGAGAACGGAGCACAAAGGATCGACGGTGATGAAGTCCAGATCCTGGCCTCGAGGTTCGGGAAGGGTTCGGTGAGGTATGGGAAGGAATGGCTTCGTTGTTGGGGTTCTGTGGGTTGCTTCGGTTATCAGAGTGCAAAATCGACGAACTTCAATGTTTCGCATTGTTCAATGCTTCTTCTCTCTCATTTTCAGTTTCTCCGAAAGCTGTTCTGTGCCGCCAGCGGAGTGAGTGAACTAGAAAGCGTAAGGAAGCGGTTCGGAAATTGGAAGAGGAAGATGGCGACGGCGCCGGGAAACCAAATGCTGGAGGGAGGAGGAGCTCCGCCGCCTCCGGGGACTGATATGACGGGAATATGCTTCCGAGACCAGCTCTGGCTCAACAGCTTCCCTCTCGATCGCAACCTTGTCTTCGATTACTTCGCCCTTTCCCCTTTCTATGATTGGACTTGCAACAACGAGCAACTCCGTATGCGATCCGTTCACCCCCTCGACCTCTCTCAACTCTCGAAAATGACGGGGACGGAGTATATGCTCAGCGAAGTTATGGAGCCGCATCTGTTTGTTATTCGCAAGCAGAAGAGAGATAGCCCCGACAAAGTCACGCCTATGCTCGCCTACTACGTCCTCGATGGTTCCATATACCAGGCTCCGCAACTCTGCAATGTTTTTGCTGCCAGAATTGGAAGGGCCCTTTATTACATACAAAAGGCATTTACTACAGCTGCCTCCAAGTTGGAGAAGATTGGATATGTTATGAGGACGGCAGAAATAGGGAGAGAGGAGGGCAAAGGGGGGATTTGGACTGGAGAGAAAAATCAGAGAAGTGAGAGACCAACTGGGTCAGTGGATTCTGAAAATGAGACTGCATTGGTGGAGTCAAAGACTGCTAAGGAGACGATTGACATAAAGGAAGTTAAGCGTGTAGATCATATTCTTGCATCCTTGCAACGCAAGTTACCACCAGCTCCGCCTCCACCACCCTTTCCAGAAGGGTATGTACCGCCTCCTACAGCTGAAGCTGAGAAAGGCACCGAAACTCAGGAAGCAGCAGAAACGCAAGCTCCTACTGCTGATCCCATAATTGATCAAGGACCAGTGGAGTTCCCAACATGCAGCCTTGCTGGAACTGTGATTAACCTGATGCTGTTATTCTCTGGTCTCTACAGGCGATGCTCTTTTCCTGTCTTCGCCTTAAATGTAGATATATGA	1572	0.5038	MLRVAISALRRRSRELKKALQDSTGISEGGAAEFTGVGEGFEEGFEDERRSIADRVGVEDFCEDGLDGFELAMCGEGVEEEREGFEGVRGWVVLEKPLGKFEGQYVVVLKVEEEVFETKGCENGAQRIDGDEVQILASRFGKGSVRYGKEWLRCWGSVGCFGYQSAKSTNFNVSHCSMLLLSHFQFLRKLFCAASGVSELESVRKRFGNWKRKMATAPGNQMLEGGGAPPPPGTDMTGICFRDQLWLNSFPLDRNLVFDYFALSPFYDWTCNNEQLRMRSVHPLDLSQLSKMTGTEYMLSEVMEPHLFVIRKQKRDSPDKVTPMLAYYVLDGSIYQAPQLCNVFAARIGRALYYIQKAFTTAASKLEKIGYVMRTAEIGREEGKGGIWTGEKNQRSERPTGSVDSENETALVESKTAKETIDIKEVKRVDHILASLQRKLPPAPPPPPFPEGYVPPPTAEAEKGTETQEAAETQAPTADPIIDQGPVEFPTCSLAGTVINLMLLFSGLYRRCSFPVFALNVDI	523

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu11g02908	523	MobiDBLite	consensus disorder prediction	384	412	-	-
	Vimu11g02908	523	MobiDBLite	consensus disorder prediction	439	455	-	-
	Vimu11g02908	523	Gene3D	Mediator complex, subunit Med6	233	362	IPR038566	-
	Vimu11g02908	523	MobiDBLite	consensus disorder prediction	438	482	-	-
	Vimu11g02908	523	FunFam	Mediator of RNA polymerase II transcription subunit 6	233	362	-	-
	Vimu11g02908	523	PANTHER	MED-6-RELATED	216	484	IPR007018	GO:0003712\|GO:0006357\|GO:0016592
	Vimu11g02908	523	Pfam	MED6 mediator sub complex component	239	364	IPR007018	GO:0003712\|GO:0006357\|GO:0016592

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	MED6	Vimu11g02908		Med6	4.4e-41	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu11g02908	K15128		-	gmx:100792248	427.943