Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02895 ATGGGAAAAGCTAGCAGGTGGTTCAAGGGTTTGTTGGGGATGAAGAAGGAGAAGGATCACAGCGACAATTCAGGCTCGCTGGCTCCTGACAAGAAGGAGAAGAAAAGGTGGAGTTTTGCCAAGCAAGGGAAGGATGTGCCATCTTCGGTTCCTACCACTGATAACACCTGGCTCAGATCCTACATTGCTGATACAGAGAATGAGCAGAATAAACATGCAATTGCCGTTGCCGCTGCCACTGCCGCCGCCGCCGATGCTGCCGTGGCTGCTGCTCAGGCTGCCGTGGCGGTTGTGAGGCTGACAAGCCAGGGTAGAGGTGCATTGTTCAGTGGAAGCAGGGAGAAGTGGGCTGCCGTGAAGATCCAAACTTTTTTTAGAGGCTACTTGGCACGGAAGGCTCTTAGAGCACTGAAAGGATTGGTTAAGATACAGGCTCTTGTTAGAGGATACTTGGTTAGAAAGAGGGCTGCTGCAACTCTTCACAGTATGCAAGCTCTAATAAGAGCTCAAACTGCTGTCAGATCACAGCGAGCTCGTCGTTCCTTGAGCAAAGAAAGCAGATTTCTACCTGAAGTTCTTGCAAGAAAATCTGTGGAACGATTTGATGAAACAAGGAGTGAATCACACAGTAAAAGGCTACCTACATCCTACGAAACATCCTTGAATGGTTTTGATGAGAGCCCCAAGATTGTTGAAATTGACACATACAAGACTCGATCAAGGTCTAGGCGCTTTACCTCTACAATGTCTGAGTGTGGAGAAGACATGTCCTGTCAGGCAATGTCGTCCCCTCTACCTTGTCATGTCCCTGGTAGAATCTCGGTTCCTGATTGCAGACACCTTCAAGATTTTGATTGGTACTTCAACGTTGATGAGTGTAGATTCTCCACTGCTCATAGCACACCACGTTTCACAAACTACGCCCGTCCCAATGCTCCAGCCACACCAGCCAAGAGTGTTTGTGGAGACACCTTCTTCAGACCTTGTTCCAATTTCCCGAACTACATGGCCAATACTCAGTCATTCAAGGCAAAACTAAGGTCTCACAGTGCTCCAAAACAAAGACCTGAACCGAAGAAAAGGCTCTCACTCAATGAAGTGATGGCAGCAAGAAACAGCATAAGTAGTGTTAGAATGCAAAGGCCATCATCCAATTTCTTCCAGACTCAAGACTCCTGGAATTTTTGA 1188 0.4756 MGKASRWFKGLLGMKKEKDHSDNSGSLAPDKKEKKRWSFAKQGKDVPSSVPTTDNTWLRSYIADTENEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGALFSGSREKWAAVKIQTFFRGYLARKALRALKGLVKIQALVRGYLVRKRAAATLHSMQALIRAQTAVRSQRARRSLSKESRFLPEVLARKSVERFDETRSESHSKRLPTSYETSLNGFDESPKIVEIDTYKTRSRSRRFTSTMSECGEDMSCQAMSSPLPCHVPGRISVPDCRHLQDFDWYFNVDECRFSTAHSTPRFTNYARPNAPATPAKSVCGDTFFRPCSNFPNYMANTQSFKAKLRSHSAPKQRPEPKKRLSLNEVMAARNSISSVRMQRPSSNFFQTQDSWNF 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02895 395 PANTHER IQ-DOMAIN 5-RELATED 1 365 - -
Vimu11g02895 395 Pfam IQ calmodulin-binding motif 141 155 IPR000048 GO:0005515
Vimu11g02895 395 Pfam IQ calmodulin-binding motif 116 135 IPR000048 GO:0005515
Vimu11g02895 395 Gene3D - 56 140 - -
Vimu11g02895 395 SMART iq_5 113 135 IPR000048 GO:0005515
Vimu11g02895 395 SMART iq_5 136 157 IPR000048 GO:0005515
Vimu11g02895 395 ProSiteProfiles IQ motif profile. 114 142 IPR000048 GO:0005515
Vimu11g02895 395 ProSiteProfiles IQ motif profile. 138 165 IPR000048 GO:0005515
Vimu11g02895 395 MobiDBLite consensus disorder prediction 1 51 - -
Vimu11g02895 395 MobiDBLite consensus disorder prediction 10 41 - -
Vimu11g02895 395 Pfam Protein of unknown function (DUF4005) 302 376 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02895 Vimu-Chr11 48800074 48802925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02895 1 379 IQD Protein Family AT3G16490 56.489 6.92e-116 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02895 - - gmx:100797686 688.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02895 11 48800074 48802925 Vimu11g02895 11 48800074 48802925 ECH
Vimu4g00284 4 1969920 1971383 Vimu11g02895 11 48800074 48802925 PCT