Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02891 ATGAACTGTACGGACACAGGCCGTGTTTGCACTTCTTTTATTGCCTTCAAGCCTGAGCCAAACCAAACGCTTGCTCTGATTCAGAGCATGTTTGATGTGTTGCCTGGTGACATCACAGTTGAAGGCAATGGGTGGGGTTACGTGTTCATAAGGAAGAATTGTTCTTGTGCTGCGGGTATCAAGAAGTACTTGTCCAATACCACGTTCACTGTGAAGTCCAATGAGGGGTTGGTGTATGACGTGGTGATGAGTGCCTATGATGGCCTTGCTGTCCTTCCCAACACAACCAGGAGGGCCAGGAACGGTGCTGTTGTGTCTCTGAGGTTGTTTTGTGGCTGCTCCAGTGGACTGTGGAACTATTTGGTCAGTTATGTGATGAGAGACGGGGATAGTATTGAGTCCTTGGCAAGCAGGTTTGGGGTTAGCATGGATAGCATTGAGAGTGTGAATGGCATTAGTAATCTGGATAATGTCACAGTTGGTTCACTTTATTACATACCACTTGATTCTGTTCCTGGTGATCCTTATCCCCTGAATAATGCTGCTCCACCAGTTCCTGTTCCTGCTCCATCCTTTGATAATTTTTCAGCTGATCAAGTTGACCACAAGGCTCATGTACCCTACGTATGGATCATTGGGGGCTTAGGAGTTGGTCTAATTCTAATTGTATTAACTGTGATTCTCTGTGTTTGTATGAGATCATCAAATTGTTTTGCTGATGATGCCAGAACTCATGAGAAAGATGCTGAGGGCAAAATTTCTCATAAATTTCATATTCTAAGGAACCCAAGTTTTTTTTGTGGTTCTGGAAGGTACATATGCGGCAAGCATGTTGAACAGAAGCAAACAGATGCTGAATCCAGCAATCACACGATTACCATTCCAAAAGCCTCAACTCTTGGGCCTGAAGTATTTGAAATGGACAAGCCTGTTGTCTTTACATATGAAGAGATTTTCTCCACGTCTGATGGTTTCTCTGACTCAAATCTACTTGGTCATGGAACATACGGTTCTGTTTATTATAGCCTCCTTCGTGATCAGGAAGTTGCTATTAAAAGAATGACTGCTACTAAAACAAAAGAATTTTTGTCAGAGATGAAAGTTTTGTGCAAGGTTCATCATGCTAATCTGGTAGAATTGATTGGCTATGCAGCTAGTCACGAGGAGCTTTTCTTAGTTTATGAATATGCTCAGAAGGGTTCACTTAGAAGCCATTTGCATGATCCTCAAAGTAAGGGTCATTCCCCACTTTCTTGGATCATGAGGGTGCAAATTGCGCTTGATGCTGCCAGGGGCCTTGAATACATACATGAGCACACAAAAACTCATTATGTACACCGTGATATCAAGACCAGTAACATATTACTTGATGCTTCCTTTAGAGCAAAGATTTCAGATTTTGGGTTAGCAAAACTTGTTGGGAAAGCAAATGAGGGAGAAATTTCAACTACCAAAGTTGTTGGTACATATGGATATCTTGCCCCAGAATATTTGAGTGAGGGTCTTGCGACAACTAAAAGTGATGTCTATGCATTTGGTGTTGTCCTTTTCGAGATTATATCAGGAAAGGAGGCCATCATTCGATCAGAAGGCACAACAACAAAAAATCCTGAAAGACGTTCATTGGCATCTATAATGCTGGGTGTTCTCAGGAATTCACCTGACTCCATGAGCATGTCAAGCTTGAGAGATTATATTGATCCAAATATGATGGATTTGTATCCCCATGATTGTGTATTTAAGCTGGCTACACTGGCAAAGCAATGTGTGGATGAGGACCCCATCTTACGACCTGATATGAGACAAGTAGTGATTTCCCTCTCACAGATTCTTCTGTCTTCTGTTGAATGGGAAGCAACTCTTGCTGGAAATAGCCAGGTTTTCAGTGGCCTTGTTCAGGGAAGATAG 1908 0.423 MNCTDTGRVCTSFIAFKPEPNQTLALIQSMFDVLPGDITVEGNGWGYVFIRKNCSCAAGIKKYLSNTTFTVKSNEGLVYDVVMSAYDGLAVLPNTTRRARNGAVVSLRLFCGCSSGLWNYLVSYVMRDGDSIESLASRFGVSMDSIESVNGISNLDNVTVGSLYYIPLDSVPGDPYPLNNAAPPVPVPAPSFDNFSADQVDHKAHVPYVWIIGGLGVGLILIVLTVILCVCMRSSNCFADDARTHEKDAEGKISHKFHILRNPSFFCGSGRYICGKHVEQKQTDAESSNHTITIPKASTLGPEVFEMDKPVVFTYEEIFSTSDGFSDSNLLGHGTYGSVYYSLLRDQEVAIKRMTATKTKEFLSEMKVLCKVHHANLVELIGYAASHEELFLVYEYAQKGSLRSHLHDPQSKGHSPLSWIMRVQIALDAARGLEYIHEHTKTHYVHRDIKTSNILLDASFRAKISDFGLAKLVGKANEGEISTTKVVGTYGYLAPEYLSEGLATTKSDVYAFGVVLFEIISGKEAIIRSEGTTTKNPERRSLASIMLGVLRNSPDSMSMSSLRDYIDPNMMDLYPHDCVFKLATLAKQCVDEDPILRPDMRQVVISLSQILLSSVEWEATLAGNSQVFSGLVQGR 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02891 635 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 48 629 IPR044812 GO:0019199|GO:0045087
Vimu11g02891 635 Pfam LysM domain 124 161 IPR018392 -
Vimu11g02891 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 444 456 IPR008271 GO:0004672|GO:0006468
Vimu11g02891 635 Gene3D LysM domain 119 172 IPR036779 -
Vimu11g02891 635 Gene3D Transferase(Phosphotransferase) domain 1 398 622 - -
Vimu11g02891 635 ProSitePatterns Protein kinases ATP-binding region signature. 331 352 IPR017441 GO:0005524
Vimu11g02891 635 SUPERFAMILY LysM domain 122 167 IPR036779 -
Vimu11g02891 635 ProSiteProfiles LysM domain profile. 122 166 IPR018392 -
Vimu11g02891 635 ProSiteProfiles Protein kinase domain profile. 325 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g02891 635 SMART serkin_6 325 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g02891 635 Gene3D Phosphorylase Kinase; domain 1 299 396 - -
Vimu11g02891 635 SUPERFAMILY Protein kinase-like (PK-like) 303 607 IPR011009 -
Vimu11g02891 635 FunFam PTI1-like tyrosine-protein kinase 3 397 621 - -
Vimu11g02891 635 Pfam Protein tyrosine and serine/threonine kinase 329 605 IPR001245 GO:0004672|GO:0006468
Vimu11g02891 635 FunFam Kinase family protein 300 396 - -
Vimu11g02891 635 SMART LysM_2 123 167 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02891 Vimu-Chr11 48761580 48767371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02891 1 635 Receptor kinase-like Gene Family AT1G51940 69.829 0.0 877
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vimu11g02891 PK_Tyr_Ser-Thr 3.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02891 - - gmx:100796989 1169.84