Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02887 ATGTATCTTACAGAGGCAAAAGAGCAAAGAGTGAGAGAGATTGAGAGAAGAGAAAAACGAGGAAAGATTCAGCTATTGTCCTTTCCTTCTCCTCGAGACTCTCTCTCTCTTCATTTCTCTCTCCCTTCGTTTCAACTGAGTGATCAAACCGCAACTTTCTCTCTGTCATACACTTGTTTAAACATCATCATGTTATCCTCCAATGCATGCTCCTTCATGTGCAAGTCGGGCGTAGGTGGGTGGTCTTCGTGCAGTAACTTCTCTGCTTCACAGAGCAGGCGTTCTGCTCCATCGAGAGTGACGTGTTGCGCTCCAACTTCGAGCAGCGGTAAAACTCACGGCGGATTTGTGATGGATAAAGAGGCAAATGGGACTCCCACGGCGGTCGGCGAAACCCCAATCGCTGGCGGCGGCGTCCGGGACGTGTACGGCGAGGATAAGGCCACGGAGGATCAGTGTGTGACTCCGTGGAGTGTCTCTGTTTCCAGTGGGTATACTTTGATGAGAGATCCACACTTCAACAAGGGACTCGCCTTCACCGAAGAAGAGAGGGACGCACACTTCTTGCGTGGCCTTCTTCCCCCAACTGTTATTTCTCAAGAAACTCAGGTAAAAAAAATGATCCAACACATACGCCAGTATCAAGTTCCATTGCAGAAGTACGTGGCAATGATGGATCTTCAGGGGAGAAATGAAAGATTGTTCTACAAGCTTCTGCTTGATCATGTTGAGGAGTTACTACCAGTTGTCTATACTCCAACAGTTGGTGAAGCATGCCAGAAATATGGGAGTATCTTCATGCATCCTCAGGGAGTTTATATAAGTTTGAAGGAGAAAGGGAGGATTCTTGAAGTTCTAAGGAATTGGCCTGAGAAGAACATACAAGTCATTGTTGTAACTGATGGAGAGAGAATTCTGGGTCTTGGGGATCTTGGCTGTCAGGGAATGGGAATACCGGTAGGAAAACTTTCTCTATATTCAGCACTTGGTGGAGTTCGTCCTTCTGCATGCTTGCCTATTACCATCGATGTGGGTACAAACAATGAGAAGTTGTTGAATGAAGAATTATATATAGGGCTCAAGCATAAACGAGTAACTGGGCAGGAATATGCTGAACTTCTGCATGAATTTATGAATGCAGTCAAGCAGATTTATGGTGAAAAAGTCCTTGTTCAGTTTGAAGACTTTGCAAACCACAATGCTTTTTCTCTACTTGAAAAATATAGGTCAACACATCTTGTCTTCAATGATGATATTCAGGGAACAGCATCAGTTGTTCTTGCAGGAGTAGTTTCAGCTCTGAAATTGGTTGGAGGAAACTTGACTGATCACAGGTTCTTATTCCTTGGTGCAGGAGAGGCTGGCACTGGAATAGCAGAGCTCCTAGCACTTGAAACTTCAAAACGGACAAATGTCCCAGTGGAAGAATTGCGCAAGAACATTTGGTTGGTGGACTCACAGGGTTTGATCGTGAAATCCCGCGAAGACTCACTTCAACATTTCAAGAGACCCTGGGCTCATGAACATGAACCTGTTAAGGAATTAGTAGATGCTATTAATAAAATTAAACCAACGGTTTTAATCGGAACATCAGGACAAGGGAGAGCTTTTACCAAGGAAGTGATTGAAGCTATGGCTTCCATCAATGAGAAACCTATTATTCTTTCCCTCTCCAACCCAACATCACAGTCAGAATGCACTGCTGAAGAAGCTTACACTTGGAGCCAGGGACGTGCCATTTTTGCTAGTGGGAGCCCTTTTGACCCTGTTGAATATGCTGAAGCTTTGGCTTCACAGGTGACTGAAGAGGACTATAGCTTGGCCACTAACCTTCCTCAACCAAAAGATCTGGTGAAGTTTGCTGAGAACTCTATGTATACACCAGCCTATAGAAACTACATGTGA 1905 0.4472 MYLTEAKEQRVREIERREKRGKIQLLSFPSPRDSLSLHFSLPSFQLSDQTATFSLSYTCLNIIMLSSNACSFMCKSGVGGWSSCSNFSASQSRRSAPSRVTCCAPTSSSGKTHGGFVMDKEANGTPTAVGETPIAGGGVRDVYGEDKATEDQCVTPWSVSVSSGYTLMRDPHFNKGLAFTEEERDAHFLRGLLPPTVISQETQVKKMIQHIRQYQVPLQKYVAMMDLQGRNERLFYKLLLDHVEELLPVVYTPTVGEACQKYGSIFMHPQGVYISLKEKGRILEVLRNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYSALGGVRPSACLPITIDVGTNNEKLLNEELYIGLKHKRVTGQEYAELLHEFMNAVKQIYGEKVLVQFEDFANHNAFSLLEKYRSTHLVFNDDIQGTASVVLAGVVSALKLVGGNLTDHRFLFLGAGEAGTGIAELLALETSKRTNVPVEELRKNIWLVDSQGLIVKSREDSLQHFKRPWAHEHEPVKELVDAINKIKPTVLIGTSGQGRAFTKEVIEAMASINEKPIILSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPVEYAEALASQVTEEDYSLATNLPQPKDLVKFAENSMYTPAYRNYM 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02887 634 SMART Malic_M_2 419 622 IPR012302 GO:0051287
Vimu11g02887 634 SMART malic_2 228 409 IPR012301 GO:0004471
Vimu11g02887 634 FunFam Malic enzyme 162 416 - -
Vimu11g02887 634 PRINTS Malic enzyme signature 549 565 IPR001891 GO:0004470|GO:0004471
Vimu11g02887 634 PRINTS Malic enzyme signature 390 408 IPR001891 GO:0004470|GO:0004471
Vimu11g02887 634 PRINTS Malic enzyme signature 446 462 IPR001891 GO:0004470|GO:0004471
Vimu11g02887 634 PRINTS Malic enzyme signature 415 431 IPR001891 GO:0004470|GO:0004471
Vimu11g02887 634 PRINTS Malic enzyme signature 234 258 IPR001891 GO:0004470|GO:0004471
Vimu11g02887 634 PRINTS Malic enzyme signature 294 323 IPR001891 GO:0004470|GO:0004471
Vimu11g02887 634 PRINTS Malic enzyme signature 330 352 IPR001891 GO:0004470|GO:0004471
Vimu11g02887 634 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 145 418 IPR046346 -
Vimu11g02887 634 ProSitePatterns Malic enzymes signature. 415 431 IPR015884 GO:0004471
Vimu11g02887 634 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 419 632 IPR036291 -
Vimu11g02887 634 Pfam Malic enzyme, N-terminal domain 228 409 IPR012301 GO:0004471
Vimu11g02887 634 Gene3D - 162 416 IPR037062 GO:0004471
Vimu11g02887 634 Gene3D - 417 602 - -
Vimu11g02887 634 PANTHER MALIC ENZYME-RELATED 135 594 - -
Vimu11g02887 634 Pfam Malic enzyme, NAD binding domain 419 594 IPR012302 GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02887 Vimu-Chr11 48736625 48741947 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02887 K00029 - gmx:100785718 952.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02887 11 48736625 48741947 Vimu11g02887 11 48736625 48741947 ECH
Vimu11g02887 11 48736625 48741947 Vimu4g00272 4 1875028 1879842 ECH
Vimu11g04665 11 67081603 67086448 Vimu11g02887 11 48736625 48741947 ECH
Vimu10g02701 10 38437818 38442486 Vimu11g02887 11 48736625 48741947 ECH
Vimu11g02887 11 48736625 48741947 Vimu10g02701 10 38437818 38442486 ECH
Vimu11g02887 11 48736625 48741947 Vimu8g02244 8 29196482 29197057 ECH
Vimu11g02887 11 48736625 48741947 Vimu3g02990 3 43943056 43944804 ECH
Vimu11g02887 11 48736625 48741947 Vimu9g00234 9 2836959 2837582 ECH
Vimu11g02887 11 48736625 48741947 Vimu6g00589 6 7112746 7114423 ECH
Vimu4g00272 4 1875028 1879842 Vimu11g02887 11 48736625 48741947 PCT