Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02877 ATGGAAGCGCCGGAATACTTCGTCGGAGGCTATTATGCGGCCGGAGGAGCTGACCAATTTTCTCAGCAGGATAAGCGCCACGCTGACCAGAAAATCGGTGAGTCTTTCGCCATTGATGACCTCCTCGACTTCTCCCACGCCGACGCCATTATGTCCGACGGTTTCTTCGACAATGTAGCCGGGAACTCCACCGACTCCTCCACCGTCACTGCTGTTGACAGCTGCAACTCCTCAATTTCGGGCAGCGACAACCGCTTCGCCGCAGCCATTGTCCCTCGCGGCTACGCCGGTGATCCTCAATTCTCCGGAGAACTCTGCGTTCCGTACGATGATATGGCGGAACTGGAATGGCTCTCGAACTTCGTTGAGGACTCGTTCTCTGCCGAGGAGGAGTTGAAAACGCTGCAGCTACTGTCCGGCGCAGCTGCGTCCACCGCCATTGGCGCGAAACCGCAGACGCCAGAGTCCTCGTCCTCCACCGACACGCTGCCGTCGTTCGCTCCCGACGAAACCGCTCGAAACGCACCGTTTCTCCACACGGAGACGCCTCTCCCGGGGAAGGCGCGCAGCAAGCGCTCACGCGCGGCGCCGGGGGACTGGTCCACACGCCTGCTTCGCCTGGTGGCACCGGAGCAAGAGAGGCCGCCGCAGGCGAAGGATTCACCGGTGAAGAAGAGAGAGGGAACGAATACAGAGTGTTCCGGAAGGAAATGCCTGCACTGCGGCGCTGAGAAGACGCCGCAGTGGCGGACGGGACCGATGGGACCGAAGACGCTCTGCAACGCCTGCGGCGTGAGGTTCAAGTCCGGGAGGCTGGTTCCGGAGTACAGGCCGGCGGCGAGCCCGACATTCGTGTCGACGAAGCATTCGAATTCGCATCGGAAGGTTTTGGAGCTGAGGCGGCAGAAGGAGATGCATCGACAGCAGCATCAGCAATTGATGAGTCAGAGTTCAATTTTCGGCGTATCAAACGGTGGAGACGAGTTCTTGATCCATCATCATCATCACCATCAGCAGTGTGGGCCAGATTTTAGACACGTTATTTAG 1047 0.5922 MEAPEYFVGGYYAAGGADQFSQQDKRHADQKIGESFAIDDLLDFSHADAIMSDGFFDNVAGNSTDSSTVTAVDSCNSSISGSDNRFAAAIVPRGYAGDPQFSGELCVPYDDMAELEWLSNFVEDSFSAEEELKTLQLLSGAAASTAIGAKPQTPESSSSTDTLPSFAPDETARNAPFLHTETPLPGKARSKRSRAAPGDWSTRLLRLVAPEQERPPQAKDSPVKKREGTNTECSGRKCLHCGAEKTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFVSTKHSNSHRKVLELRRQKEMHRQQHQQLMSQSSIFGVSNGGDEFLIHHHHHHQQCGPDFRHVI 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02877 348 MobiDBLite consensus disorder prediction 149 167 - -
Vimu11g02877 348 FunFam GATA transcription factor 227 313 - -
Vimu11g02877 348 ProSitePatterns GATA-type zinc finger domain. 238 263 IPR000679 GO:0006355|GO:0043565
Vimu11g02877 348 MobiDBLite consensus disorder prediction 217 233 - -
Vimu11g02877 348 Pfam GATA zinc finger 238 271 IPR000679 GO:0006355|GO:0043565
Vimu11g02877 348 Gene3D - 233 317 IPR013088 GO:0006355|GO:0008270
Vimu11g02877 348 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 235 295 - -
Vimu11g02877 348 Coils Coil 296 316 - -
Vimu11g02877 348 CDD ZnF_GATA 237 284 IPR000679 GO:0006355|GO:0043565
Vimu11g02877 348 MobiDBLite consensus disorder prediction 146 235 - -
Vimu11g02877 348 ProSiteProfiles GATA-type zinc finger domain profile. 232 268 IPR000679 GO:0006355|GO:0043565
Vimu11g02877 348 SMART GATA_3 232 282 IPR000679 GO:0006355|GO:0043565
Vimu11g02877 348 PANTHER GATA TRANSCRIPTION FACTOR 33 311 - -
Vimu11g02877 348 PIRSF Txn_fac_GATA_plant 19 324 IPR016679 GO:0003677|GO:0005634|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02877 Vimu-Chr11 48657740 48658917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02877 34 348 C2C2-Gata Transcription Factor Family AT4G32890 46.769 9.63e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vimu11g02877 GATA 4.6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02877 - - gmx:100776605 604.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02877 11 48657740 48658917 Vimu11g02877 11 48657740 48658917 ECH