Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02873 ATGACACAAACAACAACCTCGTCTGAAACAACCTCTTCTACGTCGTCGTCACCGTCCTCGGATTCGGGCTCAAAGGCTCATGCCCGGGCCAAGAGGCCCAGAGACTGCAGCAGGCACCCGGTGTACCACGGCGTGCGGAAGCGCAATTGGGGCAAATGGGTCTCGGAAATCCGCGAACCGCGGAAGAAGTCCCGCATCTGGCTCGGAACCTTCGCCACCCCCGAAATGGCGGCGAGGGCCCATGACGTGGCGGCGCTCACCATCAAGGGCCAATCCGCAATCCTCAACTTCCCGGAAATCGCGGACCTGCTCCCTCGCCCCCTCACGTGCTCCCCCCGCGACATTCAAGCCGCCGCCACCGCGGCCGCCTCCATGTCTAAATTCGACCCCGTAACACAAACCTCGGACTCGGAAACAGAAACTTCGGAAGAATCCGAACTGAGCGAGATAGTTGAGCTTCCGAACATCGAAGACAGCTTTAGCTTTGACTCGTCCGTTGACTCGTTCGTGATGGTCGACGTGGTGGACAGTTGGATGTTTCCGCCATTGGACTCGTTCTGCGCGGCCTTTTCCGATGAGTTGTTTCCGCAACAGTGTTGCTCTGAAACGCTATTACCCATTTGGGATTGA 630 0.581 MTQTTTSSETTSSTSSSPSSDSGSKAHARAKRPRDCSRHPVYHGVRKRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALTIKGQSAILNFPEIADLLPRPLTCSPRDIQAAATAAASMSKFDPVTQTSDSETETSEESELSEIVELPNIEDSFSFDSSVDSFVMVDVVDSWMFPPLDSFCAAFSDELFPQQCCSETLLPIWD 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02873 209 MobiDBLite consensus disorder prediction 1 42 - -
Vimu11g02873 209 Gene3D AP2/ERF domain 41 100 IPR036955 GO:0003700|GO:0006355
Vimu11g02873 209 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
Vimu11g02873 209 MobiDBLite consensus disorder prediction 126 147 - -
Vimu11g02873 209 SUPERFAMILY DNA-binding domain 41 98 IPR016177 GO:0003677
Vimu11g02873 209 FunFam Ethylene-responsive transcription factor 2 40 99 - -
Vimu11g02873 209 MobiDBLite consensus disorder prediction 1 24 - -
Vimu11g02873 209 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Vimu11g02873 209 PRINTS Ethylene responsive element binding protein signature 64 80 IPR001471 GO:0003700|GO:0006355
Vimu11g02873 209 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
Vimu11g02873 209 Pfam AP2 domain 40 90 IPR001471 GO:0003700|GO:0006355
Vimu11g02873 209 CDD AP2 42 99 IPR001471 GO:0003700|GO:0006355
Vimu11g02873 209 MobiDBLite consensus disorder prediction 25 42 - -
Vimu11g02873 209 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 11 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02873 Vimu-Chr11 48630157 48631679 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02873 1 182 AP2-EREBP Transcription Factor Family AT5G11590 49.751 1.42e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu11g02873 AP2 4.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02873 K09286 - gmx:100804056 272.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02873 11 48630157 48631679 Vimu11g02873 11 48630157 48631679 ECH