Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02862 ATGATGGCTGGCAACCCTAACTGGTGGACTTCTCATCCACCATCTTTGATCCCTCCCCAGTATGTTCTTGGATCTTCTTCTATACCTTTCAATTCTTCCACACAAAACCCTGATCAGCCTCCTCCTTCATTGAGCCAGCTTCTTTTCACTGGTTTACCGGGAGAGGAGGAGAGAGTGGCATTCAGTCATTTTCAATCAAAGAAGTTGGATGAATGGAATGAACACATGCTTAATCCATCCCACATAAATCCTATGGTTGATGTAATAAAGCAAGAGGTTTCCCAAAGTGGTAGCTTCTTTCACCAGGGACATGATCAGGAATTTCAGGTTTCTGGAGCTCCTTGGTCAGACATGGTGCCAGTTTCTTCTTCTCCTATGTCTAGTGTTGTTGCTAGCTTCAGTAGTAGTAATAATTTATTGGATTTCACTTATAACAAGGAAGATCATAGGAAGAACCAACTACCAGATCACACATCCGAGTGTAATAATACCACAGCAACCGCTGGAGTTTACAAGAAGACTAAGTGTCAACCATCTTCAAGCCAACCACCTCTCAAGGTGAGAAAGGAGAAGCTAGGTGATAGAATAACAGCACTTCACCAGCTAGTTTCCCCATTCGGAAAGACTGACACAGCTTCTGTCTTGTTAGAAGCCATTGGATACATAAGATTCCTTCAGGGTCAAATTGAGGCACTCAGTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCTGTACATGGAGAAAGAAATTCTGTATTTCCTGAGGACCCCGGTCAGCTGTTGAATGACAATGGCCTGAAAAGAAAGGGAGCTCCAAACCAGATCATGCATGCATGGCTAGCCAAAACTATTCACTTTGCATTAATTAATCATGTCTTTATCTATTTATTAATCATTAATCAGGATGCAAAAGATAAGCCAAAGGACTTGAGGAGTAGAGGGTTGTGCTTGGTTCCTGTGTCTTGTACCCAACATGTTGGAAATGAAAATGGAGCTGATTACTGGGCACCGGCATATGGCAGTGGATTTTAA 1047 0.4241 MMAGNPNWWTSHPPSLIPPQYVLGSSSIPFNSSTQNPDQPPPSLSQLLFTGLPGEEERVAFSHFQSKKLDEWNEHMLNPSHINPMVDVIKQEVSQSGSFFHQGHDQEFQVSGAPWSDMVPVSSSPMSSVVASFSSSNNLLDFTYNKEDHRKNQLPDHTSECNNTTATAGVYKKTKCQPSSSQPPLKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQGQIEALSSPYLGNGSKNMRNPQSVHGERNSVFPEDPGQLLNDNGLKRKGAPNQIMHAWLAKTIHFALINHVFIYLLIINQDAKDKPKDLRSRGLCLVPVSCTQHVGNENGADYWAPAYGSGF 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02862 348 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 49 330 - -
Vimu11g02862 348 FunFam Transcription factor bHLH123 family 186 249 - -
Vimu11g02862 348 Gene3D - 186 242 IPR036638 GO:0046983
Vimu11g02862 348 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 176 225 IPR011598 GO:0046983
Vimu11g02862 348 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 186 237 IPR036638 GO:0046983
Vimu11g02862 348 CDD bHLH_AtbHLH_like 186 233 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02862 Vimu-Chr11 48553610 48555948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02862 164 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 42.683 2.91e-29 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02862 - - gmx:100802121 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02862 11 48553610 48555948 Vimu11g02862 11 48553610 48555948 ECH