Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02856 ATGAGTCGCTCATTGAAAGCTTTCAACAAACACCTTACTCTCCTCCCTCTCCCTCTACACCTACGCTCTTCTTCTGCCCATCCCTTCATAACTTCCTCTTCTTTCCCTCTTTTCCCACATCACGTTTCCTTCCCCAGGTTCTCTTTCTCTCACCTTCGTCCACTCTCGTGTAAAGGTTGTTTGACTGTTTCTTCCTTTTATATAGCATCTGAACCTGCTACATTAATGGAGGTGGTGAAAGCAATTGCTAGGCAAGAACCTGCAGTTCATGAAAATGTTGCTATCAGAGCTGATCAGAAGAGTTATAGTTACAAGGAACTCCTATCATCAGCACAACAGATATCTAATCTCTTGTGTGCCAGTGATGCACTGGAGGTGAGTTACCCCTTACAATTCCCTTACTATTCTGTTGCTAGAACAAAGCCTTCACGGAGGAAACTAAGAAAAAGCTTGAAAATTCTAAGTGGTATCGAAACCCAGGGAAATCTTGGTGGAGCTCGAATAGGAATTGTAGCCAAACCCTCTGCTGAATTTGTTGCTGGAATAATTGGGATTTGGCTCAGCGGAGGTGTTGCCGTTCCCCTTGCAACCAGCTATCCAGAAGTAGAGATCTTGTATGTGATTGATAATTCGGATATATCTGCAATACTGAGTACTGAAGAGCATAGCGAATTAATGCAAAGCGTAGCCAATAAAAGCTCTTCCAAGTTTTTTCATCTTCCATCTGTTGTCAACATTTCTTCAGAGAAAAGCAGAAATGGACACTCACAGAATGGGAAAATTCACGAAGACAGGGTTTTCTTGGATGATATCATAGGAGGATCAAGTGAAGATGATCCAGCACTGATTTTGTACACCAGTGGGACTACAGGTAAACCTAAGGGAGTTGTTCATACACACAGAAGCATCATTTCCCAGGTTGAGTTTTTGCCAAAATTTAGTGTGAGGGGAGTTTGGCAGAGATGGCGTGAGTCATATCCAACTGATGGTTCTAAGGCTGACGATGCTATAACCGTGTTCACTGGAGTTCCAACTATCTATGCCCGATTGATACAAGGTTATAATGCAATGGATTCTGAGCTTCAACATGTTTCAGCATCTGCCGCAAATAACTTGCGTCTTATGATGTGTGGGTCCTCTGCACTTCCACTACCTGTTATGCAAGAATGGGAAGCCATCACTGGGCATCGCTTATTGGAACGATATGGCATGACTGAATTTGTGATGGCATTGTCAAATCCATTGAAAGGTGAGCGCAAGCCAGGAACTGTGGGCAAACCATTTCCTGGTATAGAGGTCAAGATCATTGCAGATGAAGATGGTGAGGATGACAACACTGTAATGGGCGAGCTTTGCGTTAAAAGCCCTTCATTGTTTAAAGAATATTATAAACTTCCTGAGGTAACGAAGGAATCGTTTACTGATGATGGATTCTTTAAGACTGGAGATGCAGTTACTATAGATGAAGACGGATATTACATCATTTTAGGACGTACTAATGCTGATATAATCAAGGCTGGTGGCTATAAGCTGTCTGCATTGGAAATTGAATCAGTTATCATAGAGGCAAGTTGCTACCATTTCCTCATTATGGGATTACCAGACAACGACTATGGAGAGATTGTAGGTGCAATCGTTGTGCTACATGCTGATATTCCAACTAAATTAATCCTGTGGGAAAAACTCCCTCGCAATGCCATGGGGAAGGTAAATAAAAAGGAGCTGAAGAAGCTGGTGGTTTCAGAACAGTGA 1752 0.4241 MSRSLKAFNKHLTLLPLPLHLRSSSAHPFITSSSFPLFPHHVSFPRFSFSHLRPLSCKGCLTVSSFYIASEPATLMEVVKAIARQEPAVHENVAIRADQKSYSYKELLSSAQQISNLLCASDALEVSYPLQFPYYSVARTKPSRRKLRKSLKILSGIETQGNLGGARIGIVAKPSAEFVAGIIGIWLSGGVAVPLATSYPEVEILYVIDNSDISAILSTEEHSELMQSVANKSSSKFFHLPSVVNISSEKSRNGHSQNGKIHEDRVFLDDIIGGSSEDDPALILYTSGTTGKPKGVVHTHRSIISQVEFLPKFSVRGVWQRWRESYPTDGSKADDAITVFTGVPTIYARLIQGYNAMDSELQHVSASAANNLRLMMCGSSALPLPVMQEWEAITGHRLLERYGMTEFVMALSNPLKGERKPGTVGKPFPGIEVKIIADEDGEDDNTVMGELCVKSPSLFKEYYKLPEVTKESFTDDGFFKTGDAVTIDEDGYYIILGRTNADIIKAGGYKLSALEIESVIIEASCYHFLIMGLPDNDYGEIVGAIVVLHADIPTKLILWEKLPRNAMGKVNKKELKKLVVSEQ 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02856 583 ProSitePatterns Putative AMP-binding domain signature. 283 294 IPR020845 -
Vimu11g02856 583 Gene3D - 310 498 IPR042099 -
Vimu11g02856 583 Gene3D - 501 551 IPR045851 -
Vimu11g02856 583 PANTHER ACYL-COA SYNTHETASE 309 577 - -
Vimu11g02856 583 SUPERFAMILY Acetyl-CoA synthetase-like 60 581 - -
Vimu11g02856 583 Gene3D - 61 309 IPR042099 -
Vimu11g02856 583 PRINTS AMP-binding signature 278 289 IPR020459 -
Vimu11g02856 583 PRINTS AMP-binding signature 290 298 IPR020459 -
Vimu11g02856 583 CDD MCS 93 577 - -
Vimu11g02856 583 Pfam AMP-binding enzyme 161 310 IPR000873 -
Vimu11g02856 583 Pfam AMP-binding enzyme 336 504 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02856 Vimu-Chr11 48503377 48509850 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02856 213 582 Monolignol Biosynthesis Gene Families AT1G20500 26.190 5.47e-23 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02856 K18660 - gmx:100813324 777.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02856 11 48503377 48509850 Vimu11g02856 11 48503377 48509850 ECH