Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02852 ATGGGAGTTAACATGTCAAACACACCACCTTACACCAAAGACTTGTTTTCTTCTCCAACTCTCTCTCTTAGCCTAGCTGGGATTTTCCGGCATGCCGAGGAGGCGGCGACGACGTCCAGGGTGTTGGTTGACGGCGTTGAGGTCCGGCGAGAGGACACTGTTGAGATTAGCAGTGACAACTCAGGACCTGTGAGATCCAGGTCAGAAGAAGATTTTGATGGAGAAGGTGCTCATGAGGAAGACGATGATGAGAACAACGATGATGGTGATAGGAGTAAGAAGAGGAAGAGGAAGTATCACAGACACACCGTTGAACAGATCAGAGAAATGGAAGCGCTTTTCAAGGAATCACCGCATCCTGATGAAAAGCAGAGGCAACAACTCAGCCAGCAACTTGGCCTTGCTCCAAGGCAAGTCAAGTTTTGGTTCCAAAATCGTCGAACGCAAATCAAGGCAATACAAGAGCGCCATGAAAACTCATTGTTGAAGACAGAATTAGACAAACTGAAGGAAGAAAACAAGGCCATGCGAGAGATCATCACCAAATCTTGTTGCCCCAATTGTGGCATGGTAACGGCTACCATAGATGCTTCCATGTCCATTGAAGAAAAGCAACTCCTTATTGAAAATGTCAAACTCAAAGCTGAGGTAGAGAAACTCCGAGCAACATTAGGAAAATGTTCACCAACGTCTCCTGCATCTTCTGCTGGTCATGACGAGGAAGAGAACAGAAGCTCTTTGGACTTTTACAATGGAGTTTTTGGGCTCGAGAAATCAAGGATAATGGAAATAGTTAACCGGGCAACTGAAGAGCTCGTAAAGATGGCAAACATGGGAGAACCATTGTGGGTTCGTAGCGTTGAAACAAGTCGTGAAATACTTAACTATGATGAATATGTGAAGGAGTTCGCAGTAAAAAATTCGAGCAGTGATAAGCCAAAGACATTCATCGAAGCCTCAAGAGACTCCGAGGTTGTTTTTATGGATCTCCCTCATCTACTTCAAACCTTTCTAGATGTGAATCAGTGGAAGGAAATGTTTCCATGCTTGATATCAAAGGCTGCCACTGTTGATGTTATATGCAATGGAGAAGGTTCCAACAGGAATGGTGCAGTGCAATTGATGTTTGCTGAGCTGCAAATGCTCACTCCAATGGTGCCCACCAGAGAAGTGTATTTTGTGAGGTGCTGCAAACAGTTGAGTGATGAGAAGTGGGCAATAATTGATGTATCTATAGACAAAGTTGAACACAACATTGACGCATCCCTTGAGAAATGCAGAAAACGCCCATCTGGTTGCATTATTGAGGATAATGGCCTAGCTTTTGGGGCAAGGCATTGGATAACCACACTACAACTTCAATGCGAACGTCTGGTTTTTAACATGGCAACAAATGTTCCTACAAAGGATTCAACTGGTGTTGCAACGTTGGCCGGGAGGAAAAGCATTTTAAAGTTGGCACAAAGAATGACATGGAGTTTCTGCCATGCAGTTGGTGCATCAAGTTTCCATACGTGGACCAAGCTCACGAGTAAAACAGGAGAAGACATAAGGATTAGCTCTAGGAAGAACTTGAATGACCCTGGTGAACCTCTTGGAGTTATCTTGTCTGCAGTTTCTTCTGTCTGGCTTCCTGTCTCTCCCAATGCACTGTTTGATTTCTTGAGGGATGAAGCTCGTCGAAGTGAGTGGGATATGATGTCCTGTGGTGGGTCAGTGCAGTCTATTGCAAATTTAGCTAAAGGAAAAGGCCGAGGCAATGCTGTAAACATCCAAAAAATAGAATCAAAAGAGAACAGTGTGTGGTTACTGCAAGATAGCTGCACAAGTGGTTATGAATCAATGGTGGCATATGCTCTTGTGGATTTTGCTGGTCTCCAATCTGTGCTGACAGGATGTGATTCAAGCAATCTTACCATTTTGCCGTCAGGATTCTCAATTCTTCCAGATGGGGTTGAGGAAAGGCCATTGGTGATTAGGTCAAAGCAAGATGAAAAAGGAACAGAAGGAGGATCTTTATTTACAATGCTATTTCAGATGCTTGTCAATGCTTCTCCTACGGCCAAGTTAACTATGGAGTCTGTGGAATCTGCCACTAATCTTGTCTCTTGTACATTGAGAAACATTAGAACAAGTTTACAGTGTGAAGATGGCTAG 2157 0.439 MGVNMSNTPPYTKDLFSSPTLSLSLAGIFRHAEEAATTSRVLVDGVEVRREDTVEISSDNSGPVRSRSEEDFDGEGAHEEDDDENNDDGDRSKKRKRKYHRHTVEQIREMEALFKESPHPDEKQRQQLSQQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKTELDKLKEENKAMREIITKSCCPNCGMVTATIDASMSIEEKQLLIENVKLKAEVEKLRATLGKCSPTSPASSAGHDEEENRSSLDFYNGVFGLEKSRIMEIVNRATEELVKMANMGEPLWVRSVETSREILNYDEYVKEFAVKNSSSDKPKTFIEASRDSEVVFMDLPHLLQTFLDVNQWKEMFPCLISKAATVDVICNGEGSNRNGAVQLMFAELQMLTPMVPTREVYFVRCCKQLSDEKWAIIDVSIDKVEHNIDASLEKCRKRPSGCIIEDNGLAFGARHWITTLQLQCERLVFNMATNVPTKDSTGVATLAGRKSILKLAQRMTWSFCHAVGASSFHTWTKLTSKTGEDIRISSRKNLNDPGEPLGVILSAVSSVWLPVSPNALFDFLRDEARRSEWDMMSCGGSVQSIANLAKGKGRGNAVNIQKIESKENSVWLLQDSCTSGYESMVAYALVDFAGLQSVLTGCDSSNLTILPSGFSILPDGVEERPLVIRSKQDEKGTEGGSLFTMLFQMLVNASPTAKLTMESVESATNLVSCTLRNIRTSLQCEDG 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02852 718 SMART HOX_1 95 157 IPR001356 GO:0003677
Vimu11g02852 718 CDD START_ArGLABRA2_like 258 456 - -
Vimu11g02852 718 Coils Coil 152 179 - -
Vimu11g02852 718 SUPERFAMILY Homeodomain-like 85 154 IPR009057 -
Vimu11g02852 718 Gene3D - 81 165 - -
Vimu11g02852 718 SUPERFAMILY Bet v1-like 487 706 - -
Vimu11g02852 718 Coils Coil 203 223 - -
Vimu11g02852 718 SMART START_1 263 457 IPR002913 GO:0008289
Vimu11g02852 718 ProSiteProfiles START domain profile. 254 437 IPR002913 GO:0008289
Vimu11g02852 718 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 93 437 IPR042160 -
Vimu11g02852 718 ProSitePatterns 'Homeobox' domain signature. 128 151 IPR017970 GO:0000981|GO:0006355
Vimu11g02852 718 Pfam Homeodomain 96 151 IPR001356 GO:0003677
Vimu11g02852 718 Pfam START domain 264 439 IPR002913 GO:0008289
Vimu11g02852 718 SUPERFAMILY Bet v1-like 256 456 - -
Vimu11g02852 718 ProSiteProfiles 'Homeobox' domain profile. 93 153 IPR001356 GO:0003677
Vimu11g02852 718 CDD homeodomain 96 151 IPR001356 GO:0003677
Vimu11g02852 718 MobiDBLite consensus disorder prediction 53 102 - -
Vimu11g02852 718 FunFam Homeobox-leucine zipper protein HDG1 80 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02852 Vimu-Chr11 48463924 48469467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02852 56 717 Homeobox Transcription Factor Family AT1G79840 63.338 0.0 854
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu11g02852 START 1.3e-36 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02852 K09338 - gmx:100806193 1174.07