Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02844 ATGTCGTCTCCGTCGCCGGCGGAGACTCCTTCCGGCACGAACTCCACTACCACTCCTCCTCCTCCGGATGAAACACCTCTCGTACCTAATGCCACTGTCTCCCCTCCTCCGCCTCCCGATATCACCTCTGCCGCCGTTAGTCCTCCTCCGCCGTTAGCCGCAGCTCCGTCGAGTCTCAGTGGCGGCGGGTTGTCGCCGGCTACATTGAGTGGAATAATTATAGGAGCCGTGTTAGGTGCAGTAAGTATGCTTATCGTTGGGGGCGTTTTCTTCTGCGTCTATAGGAATTGGAAAAAGAAGAGAAGCCAGAACAACTACTCTCAACCGTCCCAACCGAAAGTTGACATGGCTGGTGTTTCTCCAACGCCAGATGGAAAAGTAGGCTTGCCGCCCAAGCTTACTCCAGTGGGTTTAGGGAATCAGAAACTGTCATCCTCTGGTCTCCCGACACCCACTGTCAATTCTTCAGGCACTGCAAGTAGTTGGGATTCCGAGAAGGTGAAGCCTTCACCTGGCATTTCCTTGGCGCTATCTCAAAGCAGTTTTACACACGATGAATTAGTTATGGCAACGGATGGATTCTCCTACTCAAATCTTCTTGGTCAAGGTGGTTTTGGCTATGTCCACAAAGGAGTTCTCCCAAATGGGAAAATTGTTGCAGTCAAGCAGTTAAAATCTGAGAGTAGACAAGGGGAGCGTGAGTTCCATGCAGAAGTCGATGTCATTAGCCGTGTGCATCACAGACACCTTGTTTCCCTTGTTGGTTACTGCATATCAGATAACCAGAAGATGCTTGTCTACGAGTATGTGCCAAATAATACACTAGAATTTCATTTGCATGGAAAAGACAGACCACCTATGGACTGGTCAACAAGGATGAAGATTGCTATAGGATCTGCAAAAGGATTGGCATATCTGCATGAGGACTGTAATCCCAAAATCATACACCGAGACATCAAGGCGTCTAACATTCTTATTGATGATAGCTTTGAGGCTAAGGTTGCAGATTTTGGACTTGCAAAGTTTTCATCAGACACAGAAACACATGTTTCTACTCGAGTGATGGGAACTTTTGGGTTAGACTCATCATACGCTAGGCCTTTACTTTCTCAAGCGTTTGAGAATGGCAACTTCGATGGACTTCTTGATCCAAAGTTGCAGAAAAATTACAATCATGATGAGATGATTCGAATGGCCGCTTGTGCCGCATGTTGTGTGCGCCATTCAGCCAGGCTTCGGCCTCGAATGAGCCAGAAATTCGTGACCAACTCCGAGCTTTGGCAAACTGAGATCTGGCGTGTGCTTACCTCTGACAATGATAAAATTAATAACACTGAGCAGGTTGTTCGAGCTCTGGAAGGAAATATTTCTCTAGAAGATCTAAATGAGGGGAGTGCTCCTGGACACAGCAGAGTTTTTGGTTCCTTTGAGGGTTCTAGCTATGACAGCGTCCAATACAGTGAAGACATGAAGAACTTCAGGAAGCTGGCACTGGAAAGCCAAGAGCAAGGTATTAGTGAGTACAGTGGTCCCAGCAGTGATTACGGTCGACATCCATCTGTCTCTACCAGTTCGGGACAGCAAAATACCCAGGAAATTGAATTGGGGGAACGTGAACGGTAA 1623 0.4738 MSSPSPAETPSGTNSTTTPPPPDETPLVPNATVSPPPPPDITSAAVSPPPPLAAAPSSLSGGGLSPATLSGIIIGAVLGAVSMLIVGGVFFCVYRNWKKKRSQNNYSQPSQPKVDMAGVSPTPDGKVGLPPKLTPVGLGNQKLSSSGLPTPTVNSSGTASSWDSEKVKPSPGISLALSQSSFTHDELVMATDGFSYSNLLGQGGFGYVHKGVLPNGKIVAVKQLKSESRQGEREFHAEVDVISRVHHRHLVSLVGYCISDNQKMLVYEYVPNNTLEFHLHGKDRPPMDWSTRMKIAIGSAKGLAYLHEDCNPKIIHRDIKASNILIDDSFEAKVADFGLAKFSSDTETHVSTRVMGTFGLDSSYARPLLSQAFENGNFDGLLDPKLQKNYNHDEMIRMAACAACCVRHSARLRPRMSQKFVTNSELWQTEIWRVLTSDNDKINNTEQVVRALEGNISLEDLNEGSAPGHSRVFGSFEGSSYDSVQYSEDMKNFRKLALESQEQGISEYSGPSSDYGRHPSVSTSSGQQNTQEIELGERER 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02844 540 Gene3D Phosphorylase Kinase; domain 1 156 269 - -
Vimu11g02844 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 314 326 IPR008271 GO:0004672|GO:0006468
Vimu11g02844 540 SUPERFAMILY Protein kinase-like (PK-like) 169 359 IPR011009 -
Vimu11g02844 540 Gene3D Transferase(Phosphotransferase) domain 1 270 367 - -
Vimu11g02844 540 MobiDBLite consensus disorder prediction 1 61 - -
Vimu11g02844 540 FunFam Proline-rich receptor-like protein kinase PERK8 166 269 - -
Vimu11g02844 540 ProSitePatterns Protein kinases ATP-binding region signature. 200 222 IPR017441 GO:0005524
Vimu11g02844 540 MobiDBLite consensus disorder prediction 500 540 - -
Vimu11g02844 540 ProSiteProfiles Protein kinase domain profile. 194 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g02844 540 MobiDBLite consensus disorder prediction 15 55 - -
Vimu11g02844 540 Pfam Protein tyrosine and serine/threonine kinase 197 349 IPR001245 GO:0004672|GO:0006468
Vimu11g02844 540 MobiDBLite consensus disorder prediction 502 532 - -
Vimu11g02844 540 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 364 499 IPR047117 -
Vimu11g02844 540 MobiDBLite consensus disorder prediction 138 167 - -
Vimu11g02844 540 FunFam Protein kinase superfamily protein 270 342 - -
Vimu11g02844 540 SMART serkin_6 194 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g02844 540 MobiDBLite consensus disorder prediction 102 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02844 Vimu-Chr11 48437856 48442055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02844 37 526 Trihelix Transcription Factor Family AT1G70460 42.308 1.20e-115 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vimu11g02844 PK_Tyr_Ser-Thr 1.5e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02844 - - ccaj:109808169 717.613