Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02837 ATGATGGATTTCTGGCCAGAATTTCTTGCAAGCAGTTCGGGAAGAGAGTTTGTAGCTGGTGGTTTTGGAGGCATCGCTGGTATAATTGCAGGTTATCCACTTGACACACTTCGCATCAGATTGCAGAACACAAAAAATGGCTCTGCTTTCACCATCTTTAAGCACATGGTGGTCAGGGAAGGAACAGCTTCTTTGTACCGCGGCATGGCCGCACCGTTAGCCTCTGTTACTTTTCAGAATGCAATGGTTTTCCAAACGTACGCGGTTCTGTCAAGGGCATGTGACTCATCTGTTTCTCCTAAAGACCCTGCTTCCTATAAGGGTGTTGCATTGGGAGGAACTGGTACAGGAGCACTTCAAAGTCTGTTACTTTCCCCTGTAGAGTTGATCAAAATTCGACTTCAGCTGCAGAAAGAAAGCCAGATGACAGAATCCATAAAGGGTCCTATAAAGCTGGCTAAAAACATTTGGACAAAAGAAGGCCTTCGAGGCATTTATCGAGGACTTGGTGTGACTGTGATGAGGGATGGACCCTCTCATGGTTTATACTTCTGGACATATGAATACATGAGGGAACAACTTCACCCTGGTTGCAGAAAAAGTGGTGAAGAAAGTTTAAAGACTATGTTAGTAGCGGGAGGAACAGCAGGGGTGGCTAGCTGGATCAGTTGCTACCCTTTGGATGTTGTAAAGAGTAGATTACAGGCTCAAACACCCTCTTCTCTAAAGTACAAAGGCATCATAGATTGTTTCAGAAAGAGTGTTCACGAAGAAGGATACAGTGTGCTGTGGCGGGGTTTAGGAACTGCAGTTACCAGAGCTTTCATTGTCAATGGCGCCATATTCTCTGCTTATGAGATTGCACTAAGATTACTGTTTCACAATGCAAGTATTCATACCAAAGAAACTATTTAG 915 0.4426 MMDFWPEFLASSSGREFVAGGFGGIAGIIAGYPLDTLRIRLQNTKNGSAFTIFKHMVVREGTASLYRGMAAPLASVTFQNAMVFQTYAVLSRACDSSVSPKDPASYKGVALGGTGTGALQSLLLSPVELIKIRLQLQKESQMTESIKGPIKLAKNIWTKEGLRGIYRGLGVTVMRDGPSHGLYFWTYEYMREQLHPGCRKSGEESLKTMLVAGGTAGVASWISCYPLDVVKSRLQAQTPSSLKYKGIIDCFRKSVHEEGYSVLWRGLGTAVTRAFIVNGAIFSAYEIALRLLFHNASIHTKETI 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02837 304 FunFam Mitochondrial arginine transporter BAC2 12 302 - -
Vimu11g02837 304 Pfam Mitochondrial carrier protein 209 295 IPR018108 -
Vimu11g02837 304 Pfam Mitochondrial carrier protein 111 194 IPR018108 -
Vimu11g02837 304 Pfam Mitochondrial carrier protein 13 92 IPR018108 -
Vimu11g02837 304 Gene3D Mitochondrial carrier domain 13 302 IPR023395 -
Vimu11g02837 304 PRINTS Mitochondrial carrier protein signature 119 137 IPR002067 GO:0055085
Vimu11g02837 304 PRINTS Mitochondrial carrier protein signature 166 184 IPR002067 GO:0055085
Vimu11g02837 304 PRINTS Mitochondrial carrier protein signature 16 29 IPR002067 GO:0055085
Vimu11g02837 304 PRINTS Mitochondrial carrier protein signature 29 43 IPR002067 GO:0055085
Vimu11g02837 304 PRINTS Mitochondrial carrier protein signature 213 235 IPR002067 GO:0055085
Vimu11g02837 304 ProSiteProfiles Solute carrier (Solcar) repeat profile. 204 291 IPR018108 -
Vimu11g02837 304 ProSiteProfiles Solute carrier (Solcar) repeat profile. 11 93 IPR018108 -
Vimu11g02837 304 SUPERFAMILY Mitochondrial carrier 15 286 IPR023395 -
Vimu11g02837 304 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 11 292 - -
Vimu11g02837 304 ProSiteProfiles Solute carrier (Solcar) repeat profile. 104 193 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02837 Vimu-Chr11 48401724 48403553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02837 2 296 Antiporters AT1G79900 70.270 7.85e-143 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02837 K15109 - gmx:100812056 505.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02837 11 48401724 48403553 Vimu11g02837 11 48401724 48403553 ECH