Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02829 ATGTCAAAGAAAATCTCAAAATCCCTGAAAGATTATCTCATCAAAATCAAACCCTCGCAACCTTCCATGGTTAAGTTATCCTCTAAGAAATGGGTTCCCAAAGGTTGCAAGCATCCTAGGACTTCTTCTGTCGACATGGACAACAACAAAAACATAGTAAAAAAAACCACCACCAACGTCAAAGACGACGAAGCCATGTTAGCAGACATTGATCGCTTTCTCATCGAGAATTTCAAGAACCTGTTCCTCGGTGAAGAAACCACCACCAACAATGAATCCAAAGAACAAAAATCTCCCAAACTAGACTTTATCAGATTTGACTCTTCTCCAAGGTTTGATGATTCGCCACTGAACCTCTTCACTGACTCAACAACCGAACCAGGACGATCCAGTCTGACCATGTCTGAGCCTGAGGGCGCGGAGGAACAAACCACCGTTCTGAGTAATTGCGTGGTGGTTTTGGCCAACTCCGCTAGACCCACCGAGGATTTCCGTCGGTCCATGGAGGGCATGGTTGAAGCAAGATTGAAGAAGAGTGAAAAGGTGGATTGGGAGTTCATGCAGGAGCTTTTGTTCTGTCACATGAATATGAACCAGAAGAAGTGGCACAAATTCATTCTCAGCGCCTTCGTGGATATCGCCACCAGCCTCCGCCAGACACCGGAGATTTCTCCGGCGAACCTCCAGCCGCCGCGGAGCGTTCGGACTGTTAGGATAGGAAGAGAAGTGAGGAAGAAGACGAAGGAAGCAATCACCTTGGAATTTGGGTCACCCTAA 777 0.4698 MSKKISKSLKDYLIKIKPSQPSMVKLSSKKWVPKGCKHPRTSSVDMDNNKNIVKKTTTNVKDDEAMLADIDRFLIENFKNLFLGEETTTNNESKEQKSPKLDFIRFDSSPRFDDSPLNLFTDSTTEPGRSSLTMSEPEGAEEQTTVLSNCVVVLANSARPTEDFRRSMEGMVEARLKKSEKVDWEFMQELLFCHMNMNQKKWHKFILSAFVDIATSLRQTPEISPANLQPPRSVRTVRIGREVRKKTKEAITLEFGSP 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02829 258 MobiDBLite consensus disorder prediction 117 142 - -
Vimu11g02829 258 NCBIfam uncharacterized plant-specific domain TIGR01568 151 218 IPR006458 -
Vimu11g02829 258 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 59 217 IPR038933 GO:0045892
Vimu11g02829 258 ProSiteProfiles OVATE domain profile. 153 216 IPR006458 -
Vimu11g02829 258 Pfam Transcriptional repressor, ovate 157 217 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02829 Vimu-Chr11 48352664 48353637 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vimu11g02829 Ovate 1.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02829 - - var:108320446 332.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02829 11 48352664 48353637 Vimu11g02829 11 48352664 48353637 ECH
Vimu4g00220 4 1543551 1544432 Vimu11g02829 11 48352664 48353637 PCT