Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02828 ATGAGTGTGGTGGGTTTTGATTTCGGTAATGAGAGCTGCGTTGTTGCAGTTGCGAGGCAAAGAGGGATTGACGTTGTGCTTAATGATGAGTCCAAACGTGAAACGCCTGCTATTGTGTGCTTTGGTGAGAAGCAACGTTTCATTGGCACTGCTGGTGCTGCCTGCAGTCTGATGAACCCTAAGAATTCAATATCAGAGTTTAAGAGACTCATTGGCAGAAAATTCTCTGATCCTGAATTGCAACGGGATCTTAAGTCATTGCCATTTCTTGTTACCGAGGGGATTGATGGGTATCCGTTGATTCACGTGCAATACTTGGGTGAGGCTAAGAAATTTACACCTACACAAGTGTTTGGTATGATGTTGTCGAATCTTAAGGGAATTGCAGAGAACAATCTCACTACGGCTGTTGTTGATTGTTGCATTGGAATTCCAGTTTATTTTACTGATTTGCAGAGACGGGCGGTGTTGGATGCGGCCACGATTGTTGGTCTACACCCGCTTCAATTGATTCATGAAATGACTGCCACTGCCTTGGCGTATGGGATTTATAAAACGGACCTTCCAGAAAACGATCAACTGAATGTTGCTTTTGTTGATGTTGGGCATGCTAGCATGCAAGTCTGTATTGCTGGATTCAAGAAGGGGCAGTTGAAAGTGTTGGCTCATTCGTATGATAGGTCTTTAGGTGGTAAGGATTTTGACGAGGTTTTGTTCCATCACTTTGCTACTAAGTTCAAGGAGGAGTATAAGATTGATGTTTTCCAGAATGCTAGGGCTTGCTTAAGGTTGAGGGCTGCCTGTGAGAAGATGAAGAAGATGCTTAGTGCAAATAGTGAGGCACCTCTCAACATTGAGTGTTTGATGGACGAGAAGGATGTTCGTGGCTTCATGAAGCGAGATGATTTTGAGCAATTAAGTCTTCCAATTTTGGAACGTGTCAGGGGACCTTTGGATAAGGCACTCGCTGAAGCAAATCTTACCATTGAAAATGTGCATATGGTTGAGGTGGTTGGTTCAGGTTCTCGTGTACCCGCCATAACCAGAATATTGACAGAGTTTTTCAAGAAAGAGCCTAGGCGAACAATGAATGCTAGTGAGTGTGTCGCCAAGGGTTGTGCTTTGAAATGTGCAATTCTTAGTCCCACGTTTAAAGTACGAGAATTTCAGGTCAATGAAAGCCTTCCTTTCTCGATTTCCCTTGCATGGAAAGGTACTGGTCCAGATGCACAGGAGAATGCACCACAAAATCAGCAGAGTTCTCTTGTTTTTCCCAAGGGTAATCCCATACCAAGTATCAAAGCTCTAACATTCTATAGGTCAGGAACATTTTCTATTGATGTACATTATGGCGATGTAAGTGAGCTGCAAACACCTACCAAGATTAGCACATATACTATTGGTCCGTTCCAAACTGCAAATAGTGAAAGGACAAAAGTGAAAGTGAAAGTTCGTTTGAATATTCATGGAATTGTATCTCTGGAGTCCGCCATGCTCCTGGAAGAAAACGAAGTTGAGGTTCCGATCACCAAAGAATCAGCAGGGGAAAATACTAAGCCAAACATCAACGAAGCCCCAATTGAGGCTGCTACACCTCCAGCCTCCAATGACACTAGTGCAAATGTGCAAGATGCAAAGGTTAGTACTGATGCTTCGGAGGGTGAAAATGGTGTTCCTCAGAATGAAGATAAGCCTCTGCAAACAAATATTGATACCAAGGCGAGTAATGCTCCAAAGAAAAAGGTTAAAAAAACAAGCATTGCTGTATCAGAGTTAGTTTATGGAGCAATGGCCTCTTTGGATGTCCAAAAGGCAATAGAGAAGGAGTTTGAAATGGCTTTGCAAGATCGTGTGATGGAGGAAACGAAGGACAAGAAAAATGCAGTTGAGGCTTATGTTTATGACATGAGAAACAAGCTTAATGACAAATACCAAGAGTTTGTCATTGCTTCAGAGAGAGAAGATTTTACTGCCAAACTCCAGGAAGTGGAAGATTGGCTTTATGATGAGGGTGAAGATGAAACTAAAGGTGTATATATTGCTAAGCTTGAAGCACTAAAAAAGCAAGGTGATCCAATTGAAGGACGTTACAAAGAATACATGGAGAGGGGTAATATAATTGAGCAATTCATGTATTGTATAAATAGTTATAGAGAAGCTGCAAAGTCGAAGGACCCCAAATTTGATCACATCGACATCAACGAGAAACAGAAGGTCATAAATGAATGTGTTGAAGCTGAGAAATGGTTTATGGAGAAGCAACAACTACAAAGCTCACTTCCAAAATATATCAACCCTGTACTCTTGTCTGCTGAAATTAGAAAGAAAGCTGAGATTGTTGATAGGTTCTGCAAGCCAATTATGACAAAACCAAGGCCAACCAAACCAACTACTTCCACTGGATCAGGAGCCCCATATCCGCAGGGTGATGAGAAGCAACACCCTAGAGGGAATGCTAATGCCAGCAGTAACGAAAATACTGGGGATAGAAGTAGCCAGGCTGCATCAGCTTCTCCTGAACCAATGGAGACTGATGACTCTGAGAACGCAGGCTCTGCATAA 2562 0.4239 MSVVGFDFGNESCVVAVARQRGIDVVLNDESKRETPAIVCFGEKQRFIGTAGAACSLMNPKNSISEFKRLIGRKFSDPELQRDLKSLPFLVTEGIDGYPLIHVQYLGEAKKFTPTQVFGMMLSNLKGIAENNLTTAVVDCCIGIPVYFTDLQRRAVLDAATIVGLHPLQLIHEMTATALAYGIYKTDLPENDQLNVAFVDVGHASMQVCIAGFKKGQLKVLAHSYDRSLGGKDFDEVLFHHFATKFKEEYKIDVFQNARACLRLRAACEKMKKMLSANSEAPLNIECLMDEKDVRGFMKRDDFEQLSLPILERVRGPLDKALAEANLTIENVHMVEVVGSGSRVPAITRILTEFFKKEPRRTMNASECVAKGCALKCAILSPTFKVREFQVNESLPFSISLAWKGTGPDAQENAPQNQQSSLVFPKGNPIPSIKALTFYRSGTFSIDVHYGDVSELQTPTKISTYTIGPFQTANSERTKVKVKVRLNIHGIVSLESAMLLEENEVEVPITKESAGENTKPNINEAPIEAATPPASNDTSANVQDAKVSTDASEGENGVPQNEDKPLQTNIDTKASNAPKKKVKKTSIAVSELVYGAMASLDVQKAIEKEFEMALQDRVMEETKDKKNAVEAYVYDMRNKLNDKYQEFVIASEREDFTAKLQEVEDWLYDEGEDETKGVYIAKLEALKKQGDPIEGRYKEYMERGNIIEQFMYCINSYREAAKSKDPKFDHIDINEKQKVINECVEAEKWFMEKQQLQSSLPKYINPVLLSAEIRKKAEIVDRFCKPIMTKPRPTKPTTSTGSGAPYPQGDEKQHPRGNANASSNENTGDRSSQAASASPEPMETDDSENAGSA 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02828 853 MobiDBLite consensus disorder prediction 787 853 - -
Vimu11g02828 853 Gene3D - 38 113 - -
Vimu11g02828 853 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 600 696 IPR029048 -
Vimu11g02828 853 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 384 630 IPR029047 -
Vimu11g02828 853 FunFam Heat shock 70 kDa protein 4 597 707 - -
Vimu11g02828 853 FunFam Heat shock 70 kDa protein 4 230 313 - -
Vimu11g02828 853 CDD HSPA4_like_NDB 2 381 - -
Vimu11g02828 853 Gene3D - 598 709 IPR029048 -
Vimu11g02828 853 MobiDBLite consensus disorder prediction 532 575 - -
Vimu11g02828 853 PRINTS 70kDa heat shock protein signature 332 348 - -
Vimu11g02828 853 PRINTS 70kDa heat shock protein signature 30 42 - -
Vimu11g02828 853 PRINTS 70kDa heat shock protein signature 363 383 - -
Vimu11g02828 853 PRINTS 70kDa heat shock protein signature 140 160 - -
Vimu11g02828 853 PRINTS 70kDa heat shock protein signature 2 15 - -
Vimu11g02828 853 Pfam Hsp70 protein 3 697 IPR013126 GO:0005524|GO:0140662
Vimu11g02828 853 Gene3D Actin; Chain A, domain 4 230 313 - -
Vimu11g02828 853 MobiDBLite consensus disorder prediction 815 853 - -
Vimu11g02828 853 Gene3D - 186 360 - -
Vimu11g02828 853 FunFam Heat shock 70 kDa protein 4 108 207 - -
Vimu11g02828 853 SUPERFAMILY Actin-like ATPase domain 1 185 IPR043129 -
Vimu11g02828 853 FunFam Heat shock 70 kDa protein 4 38 113 - -
Vimu11g02828 853 SUPERFAMILY Actin-like ATPase domain 195 380 IPR043129 -
Vimu11g02828 853 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 713 793 IPR029048 -
Vimu11g02828 853 FunFam Heat shock 70 kDa protein 4 1 71 - -
Vimu11g02828 853 MobiDBLite consensus disorder prediction 792 806 - -
Vimu11g02828 853 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 387 594 IPR029047 -
Vimu11g02828 853 MobiDBLite consensus disorder prediction 510 581 - -
Vimu11g02828 853 Gene3D - 5 374 - -
Vimu11g02828 853 PANTHER HSC70CB, ISOFORM G-RELATED 1 845 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02828 Vimu-Chr11 48345119 48349660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02828 4 405 Calmodulin-binding Proteins AT1G16030 36.049 2.13e-81 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02828 K09489 - gmx:100816539 1400.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02828 11 48345119 48349660 Vimu11g02828 11 48345119 48349660 ECH
Vimu4g00218 4 1521960 1526160 Vimu11g02828 11 48345119 48349660 PCT