Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02817 ATGGCCAAAGAAGGTCTTGGACTTGAAATCACGGAGCTGAGATTGGGTCTACCCGACGCTGAGCATGTGGCTGTGGCTAACAAGAACGGTGAAAAGAAGAATAAGAGGGTGTTCTCGGAGATTGATGATGTTGGAGATGAAAACAGCTCCTCCGGCGGCGGTGGCGACCGGAAAATGGAGAACAAGAATCAAGTGGTGGGGTGGCCTCCGGTGTGCTCCTACAGGAAGAAGAACAGTGTGAACGAAGCTTCGAAAATGTACGTTAAGGTTAGCATGGATGGTGCTCCTTTCTTGCGTAAAATGGATCTGGGTATGCACAAAGGATACTCCGATTTAGCCTTCGCTTTGGAGAAGCTCTTTGGTTGCTATGGAATGGTGGAAGCATTGAAGAATGTTGAGAATGGTGAACACGTTCCCATTTATGAGGACAAAGATGGTGACTGGATGCTTGTTGGAGATGTGCCATGGGAAATGTTCATGGAGTCTTGTAAGAGGTTGAGGATTATGAAGAGAGCAGATGCAAAGGGATTCGGTTTGCAACCAAAAGGATCCTTAAAGGGATTCATAGAAAGCGTGGGAAAGTGA 585 0.4701 MAKEGLGLEITELRLGLPDAEHVAVANKNGEKKNKRVFSEIDDVGDENSSSGGGGDRKMENKNQVVGWPPVCSYRKKNSVNEASKMYVKVSMDGAPFLRKMDLGMHKGYSDLAFALEKLFGCYGMVEALKNVENGEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKRADAKGFGLQPKGSLKGFIESVGK 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02817 194 Pfam AUX/IAA family 57 177 IPR033389 -
Vimu11g02817 194 MobiDBLite consensus disorder prediction 40 62 - -
Vimu11g02817 194 ProSiteProfiles PB1 domain profile. 85 173 IPR000270 GO:0005515
Vimu11g02817 194 FunFam Auxin-responsive protein 80 181 - -
Vimu11g02817 194 Gene3D - 79 181 - -
Vimu11g02817 194 SUPERFAMILY CAD & PB1 domains 78 170 - -
Vimu11g02817 194 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 174 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02817 Vimu-Chr11 48244682 48247655 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02817 81 192 B3 DNA Binding Superfamily AT4G23980 32.143 4.90e-11 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vimu11g02817 AUX_IAA 2.9e-42 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02817 K14484 - gmx:547784 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02817 11 48244682 48247655 Vimu4g00200 4 1376403 1378477 PCT