Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02816 ATGAAGAAGGAAAGCAGTGTTACACTGAAAACTGGGGAGCTATCTGGTCGAGTGACACGGGCTCGGGCTGCTGCTCATTGCTCATCAGGAAAGCTACCCCCTTTGAAAGAGAGATCACAGCAAAATCAGAAGCAGTTATCCAGAGTCAATTCAAAAAGAGCAGCTTCTGATAATACATGTGTTCCTCGTAAAAAAAGGACCGTTCTTCAGGATGTTACTAATGTTTGCTGTGAAAATGCGTACATGAGTTGTGTCAACTCAAATAAAATTCAGGCTAAGAAAAGAAAGCTGTCTAAGGCTGCTCAAGTTAATGTGTCCAAAGTGGTTCCTTCTGTTGCTGTAGACTCACTGCAATTTCAAGCTGACTCCAAAGCAAAAAGTTTACAGGAAACGGCATTGAAATCAGAAGATACTATGTGCTCAATTAATTTGGAACACAAAGAACTTCTGCGGCCAAGTTCCAATGAGTGTAACATGGATGTTCGATTGCCTGAAAGTCAGATGTCTGGAATATCTGGTCAACCTTTGATTTCTCAGAATAAAGACAAGAAAGGTAACCTTTCGAAAGTTTTAACTGCGTTGAAGGATCAAGACGTCACTAGCATAGACGATGATCTTGGAGATCCTCTATTGTGCAGCCTCTATGCTGCTGATATCTACGACACCATGCGTGTTGCTGAGCATCCAACTATTATCACAATGGATGCTGATAAGATGCTGAACTGGGTGCTTGCAAGAAGGCCTTATCCTAATTTTATGGAGATGGTGCAGCGAGATATCACTCAAAGCATGCGTGGAATACTGGTTGATTGGCTTGTAGAGGTTTCGGAGGAATACAAATTGGTTACAGACACTCTTTACCTCACTGTGTACCTCATAGATTGGTTCCTCTCCAAAAACTACATTGAAAGACAGAGACTTCAGCTACTTGGTATCACCTGCATGTTAATTGCCTCGAAGTACGAAGAAATTAACGCCCCGCGTATTGAAGATTTCTGCTTCATTACAGACAATACATACACCAAAGCTGAGGTGCTGAAAATGGAGAGTCAAGTGTTGAAGTCGTCTGAATATCAACTGTTTGCTCCCACCATAAAAACATTTCTCAGGAGGTTTCTTCGGGCAGCACAAGCTTCATACAAGGATCCAAGCCTTGAATTAGAGTACCTGGCCAATTACCTAGCTGAACTAACACTCATGGACTATGGTTTCTTGAATTTCCTTCCTTCTATCATTGCTGCATCAGCAGTGTTTCTTGCCCGGTGGACACTGGATCAGTCAAACCATCCATGGAATCCAACTCTTCAACACTATGCCAGTTACAAAGCATCAGATTTGAAAACCACAGTTCTTGCATTGCAAGACCTGCAGCTGAATACTGACGGTTGCCCTCTAACTGCCATTCGCACAAAATATAGACAAGACAAGTTCAAGTGTGTAGCAGCTCTGTCTTCACCAAAACTGCTTGAAACTTTGTTCTGA 1482 0.4231 MKKESSVTLKTGELSGRVTRARAAAHCSSGKLPPLKERSQQNQKQLSRVNSKRAASDNTCVPRKKRTVLQDVTNVCCENAYMSCVNSNKIQAKKRKLSKAAQVNVSKVVPSVAVDSLQFQADSKAKSLQETALKSEDTMCSINLEHKELLRPSSNECNMDVRLPESQMSGISGQPLISQNKDKKGNLSKVLTALKDQDVTSIDDDLGDPLLCSLYAADIYDTMRVAEHPTIITMDADKMLNWVLARRPYPNFMEMVQRDITQSMRGILVDWLVEVSEEYKLVTDTLYLTVYLIDWFLSKNYIERQRLQLLGITCMLIASKYEEINAPRIEDFCFITDNTYTKAEVLKMESQVLKSSEYQLFAPTIKTFLRRFLRAAQASYKDPSLELEYLANYLAELTLMDYGFLNFLPSIIAASAVFLARWTLDQSNHPWNPTLQHYASYKASDLKTTVLALQDLQLNTDGCPLTAIRTKYRQDKFKCVAALSSPKLLETLF 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02816 493 Pfam Cyclin, C-terminal domain 363 485 IPR004367 -
Vimu11g02816 493 MobiDBLite consensus disorder prediction 1 59 - -
Vimu11g02816 493 PANTHER CYCLINS 155 474 IPR039361 -
Vimu11g02816 493 SUPERFAMILY Cyclin-like 207 359 IPR036915 -
Vimu11g02816 493 FunFam Mitotic cyclin 6 248 348 - -
Vimu11g02816 493 SUPERFAMILY Cyclin-like 363 488 IPR036915 -
Vimu11g02816 493 MobiDBLite consensus disorder prediction 34 57 - -
Vimu11g02816 493 Gene3D - 247 482 - -
Vimu11g02816 493 SMART cyclin_7 367 455 IPR013763 -
Vimu11g02816 493 SMART cyclin_7 270 354 IPR013763 -
Vimu11g02816 493 Gene3D - 248 361 - -
Vimu11g02816 493 CDD CYCLIN_AtCycA_like_rpt1 208 359 - -
Vimu11g02816 493 PIRSF Cyclin_A_B_D_E 23 492 IPR046965 GO:0016538|GO:0044772
Vimu11g02816 493 CDD CYCLIN_AtCycA-like_rpt2 363 477 - -
Vimu11g02816 493 SMART Cyclin_C_2 363 486 IPR004367 -
Vimu11g02816 493 FunFam Cyclin A1 350 482 - -
Vimu11g02816 493 Pfam Cyclin, N-terminal domain 247 359 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02816 Vimu-Chr11 48236672 48241777 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02816 1 493 Core Cell Cycle Gene Families AT1G80370 54.167 1.28e-168 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02816 K06627 - gmx:100789757 753.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02816 11 48236672 48241777 Vimu11g02816 11 48236672 48241777 ECH