Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02815 ATGATCCTGATGTATGGCGCCCACCCAGTAGGGATACCAGTAGGAGACCCGCCAGGGCCGGTCAAGTGGGTACCCGCAAATCTCCCCAAGATGGGGCCTGGGCGCGAGGTTCTACTGCTAGAAGTGGTGCAACTGGGCGTGGTGGTGCTAAAGGTGGTGCTACTAGTAGGGTTAACTCGGGGACACGAGCGCCCGCTGCTGGAAAGAAGGGCAATGTTTCTGGAAACTGTTACTAATGGACAAAATGGTGATTCTGAAGATGGTAAGTCAAAGAAGGGTCAATATGAAGGTCCCGATCCTGAATTGGCTGCAATGCTTGAAAGGGATGTTTTGGAAACCTCTCCTGGAGTTAGATGGGATGATGTTGCAGGACTTACTGAAGCAAAAAGACTTCTAGAAGAAGCTGTTGTGCTTCCCTTGTGGATGCCTGAATATTTCCAGGGAATCAGGAGGCCATGGAAAGGCGTTCTCATGTTTGGACCTCCAGGAACCGGGAAGACACTTCTTGCTAAAGCAGTTGCTACTGAATGTGGGACCACTTTCTTTAACGTATCTTCTGCAACTTTGGCTTCTAAATGGCGTGGTGAGAGTGAGCGCATGGTGCGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGCACAATATTTATTGATGAAATTGATTCTCTATGCAATGCAAGGGGGTTGATGGTGGCGACTGATGTGAATATAGATGAAGTGGCTCGGAGGACAGAGGGCTACAGTGGAGATGATTTGACCAATGTGTGTCGTGATGCTTCCTTGAATGGTATGAGGCGAAAGATAGCAGGAAAGACTCGTGATGAAATCAAGAACATGTCCAAGGATGAGATTTCAAAGGACCCTGTTGCCATGTGTGATTTTGAAGAAGCTTTGGTAAAGGTCCAACGAAGTGTTTCTCAGGCCGACATTGAACGCCACGAGAAGTGGTTTACCGAGTTTGGATCAGCATGA 975 0.481 MILMYGAHPVGIPVGDPPGPVKWVPANLPKMGPGREVLLLEVVQLGVVVLKVVLLVGLTRGHERPLLERRAMFLETVTNGQNGDSEDGKSKKGQYEGPDPELAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGLMVATDVNIDEVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALVKVQRSVSQADIERHEKWFTEFGSA 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02815 324 Pfam Vps4 C terminal oligomerisation domain 277 322 IPR015415 -
Vimu11g02815 324 PANTHER AAA DOMAIN-CONTAINING 234 323 - -
Vimu11g02815 324 SMART AAA_5 152 260 IPR003593 GO:0016887
Vimu11g02815 324 FunFam Katanin p60 ATPase-containing subunit A-like 2 114 230 - -
Vimu11g02815 324 Gene3D - 228 324 - -
Vimu11g02815 324 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 320 IPR027417 -
Vimu11g02815 324 Gene3D - 114 227 IPR027417 -
Vimu11g02815 324 Pfam AAA+ lid domain 235 276 IPR041569 -
Vimu11g02815 324 MobiDBLite consensus disorder prediction 78 98 - -
Vimu11g02815 324 Pfam ATPase family associated with various cellular activities (AAA) 156 230 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02815 Vimu-Chr11 48221839 48226088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02815 151 247 Calmodulin-binding Proteins AT3G56690 40.952 9.84e-17 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02815 K07767 - msin:131223314 366.311