Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02786 ATGGATGTCATTTGTCAAGCAAAATCTGGGATGGGAAAGACTGCTGTTTTTGTTCTTTCTACACTTCAGCAAGTTGATCCTGTTCCTGGTCAAGTTGCAGCTCTTGTTCTTTGCCACACAAGAGAACTGGCTTATCAGATTTGCCATGAATTTGAGAGATTCAGCACATATCTTCCTGATATAAAGGCTGCTGTTTTCTATGGTGGCGTCAATATCAAGGTTCACAAAGAATTGCTCAAGAATGAATGTCCTCATATTGTTGTTGGAACACCTGGGAGGATTCTTGCTCTGGCTAGAGATAAGGACCTTGGTTTAAAGAACGTGAGGCATTTCATACTTGATGAGTGTGACAAGATGCTTGAATCACTTGATATGAGAAGAGACGTCCAGGAGATTTTCAAATTGACTCCTCATGATAAACAAGTGATGATGTTTTCAGCCACACTTAGTAAAGAGATTCGACCTCCTATGGAAATCTATGTGGATGATGAGGCCAAGTTGACGCTTCATGGTCTTGTCCAGCACTACATCAAATTGCAAGAGTCAGAGAAGAACCGGAAGTTGAATGATCTTCTTGATGCTCTGGACTTCAACCAAGTAGTTATTTTTGTCAAGAGTGTTAGCAGAGCAGCAGAGTTGAACAAGTTGCTTGTGGAATGTAACTTCCCATCCATCTGCATACATTCTGCAATGTCACAAGAAGAAAGATTGAAACGATACAAAGGCTTCAAGGAAGGGAAGCAAAGGATTCTCGTGGCAACTGACTTAGTAGGGAGGGGGATTGACATAGAACGAGTTAATATAGTTATTAATTATGACATGCCTGATTCTGCGGATACTTACTTGCACAGGGTAGGAAGAGCAGGTAGATTTGGCACGAAGGGGCTTGCTATTACTTTTGTCTCCTCCACTGCCGACTCTGAAGTTCTTAATCAGGTGCAATCTAGGTTTGAAGTTGATATTAAGGAGCTTCCTGAACAAATTGACACTTCGACATACAGTAAGACTTGCCAAATTGATGACGTTTTGGACAATAGAGGAGGTGAAATTCGAAAGATCTTTGCCCATATTGAGGGATGGATTAGGTGGCATCTCATAAATTTGAGTGCTTTGACACAATATTTAACGAAAAATGTTATATTGTTTTAA 1149 0.4047 MDVICQAKSGMGKTAVFVLSTLQQVDPVPGQVAALVLCHTRELAYQICHEFERFSTYLPDIKAAVFYGGVNIKVHKELLKNECPHIVVGTPGRILALARDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPPMEIYVDDEAKLTLHGLVQHYIKLQESEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSAMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSTADSEVLNQVQSRFEVDIKELPEQIDTSTYSKTCQIDDVLDNRGGEIRKIFAHIEGWIRWHLINLSALTQYLTKNVILF 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02786 382 Gene3D - 169 336 IPR027417 -
Vimu11g02786 382 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 167 IPR014001 -
Vimu11g02786 382 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 187 332 IPR001650 -
Vimu11g02786 382 CDD SF2_C_DEAD 172 301 - -
Vimu11g02786 382 Pfam Helicase conserved C-terminal domain 185 292 IPR001650 -
Vimu11g02786 382 Gene3D - 1 168 IPR027417 -
Vimu11g02786 382 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 2 310 - -
Vimu11g02786 382 SMART helicmild6 211 292 IPR001650 -
Vimu11g02786 382 Pfam DEAD/DEAH box helicase 2 153 IPR011545 GO:0003676|GO:0005524
Vimu11g02786 382 FunFam DEAD-box ATP-dependent RNA helicase 168 336 - -
Vimu11g02786 382 SMART ultradead3 1 175 IPR014001 -
Vimu11g02786 382 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 306 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02786 Vimu-Chr11 48054689 48057563 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02786 1 333 Eukaryotic Initiation Factors Gene Family AT5G11170 90.029 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02786 K12812 - gmx:100799082 651.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02786 11 48054689 48057563 Vimu11g02786 11 48054689 48057563 ECH