Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02784 ATGGTGCAATCAAGGAAATTCAGAGGTGTAAGGCAACGCCATTGGGGCTCGTGGGTTTCTGAGATTCGTCACCCATTATTGAAAAGGAGGGTGTGGCTTGGGACATTCGAGACAGCTGAGGAAGCAGCAAGAGCATACGATGAAGCAGCCATTTTGATGAGTGGAAGAAACGCTAAAACAAACTTCCCAGTTGGTGAAAACCAGGTGGTGAATCACAGCACTTCTTCTTCTTCTTCTTCATCTTCCACCTCTACATTGTCTGCAGTTCTGAGTGCAAAGCTTAGGAAGTGCTGCAAATCTCCCTCACCTTCCCTCACTTGCCTGAGGCTTGACACTGAGAATTCCCACATAGGGGTGTGGCAGAAGAGAGCAGGCCCTCGTTCTGACTCTAACTGGATCATGATGGTTGAGTTGGAGAAAAAGAACAGCCCTGATCATGATCATGATCAAGATCAAGATCAAGGTCCTTCTTCTGATTCTGAAGTTCCTGTTGTTGTTGTTGATCATCATGCTGCAGAGAAGATAAAGCCCGAGGAAGGTAATGGCTTAGATGAGGAGCAGAGAATGGCTCTGCAGATGATAGAGGAGCTTCTGAATAGGAATTGA 606 0.4653 MVQSRKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDEAAILMSGRNAKTNFPVGENQVVNHSTSSSSSSSSTSTLSAVLSAKLRKCCKSPSPSLTCLRLDTENSHIGVWQKRAGPRSDSNWIMMVELEKKNSPDHDHDQDQDQGPSSDSEVPVVVVDHHAAEKIKPEEGNGLDEEQRMALQMIEELLNRN 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02784 201 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Vimu11g02784 201 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Vimu11g02784 201 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Vimu11g02784 201 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 153 - -
Vimu11g02784 201 MobiDBLite consensus disorder prediction 166 185 - -
Vimu11g02784 201 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Vimu11g02784 201 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Vimu11g02784 201 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Vimu11g02784 201 MobiDBLite consensus disorder prediction 142 185 - -
Vimu11g02784 201 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Vimu11g02784 201 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Vimu11g02784 201 FunFam Ethylene-responsive transcription factor 2 5 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02784 Vimu-Chr11 48042805 48043753 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02784 1 201 AP2-EREBP Transcription Factor Family AT1G15360 61.321 1.41e-78 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu11g02784 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02784 - - gmx:100796962 309.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02784 11 48042805 48043753 Vimu11g02784 11 48042805 48043753 ECH