Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02783 ATGGCGCAAATTCTGCTCCATGGGACTCTCCACGCTACCATCTATGAGGTTGATAAGCTCAATGCTGGTGGTGGCGGCAATTTTTTCAGCAAGGTATTTGTTTTAGCCTGTTTGGACCCTTCTGAATCTGGTGGTTTAACTGTTGATTTTGAGTTACTATGTGTTGGATTTGAAATTGGAGATGTACTGCAAATTGCTTACAAACCTCTCAAGCAAAACATTGAGGAGACTGTAGGTATTGGAAAGGGAGTTACTAAACTCTATGCAACCATTGATCTGGAGAAGGCAAGAGTAGGAAGGACTAGAATTTTAGAAAATGAACATTCTAATCCCAAATGGGATGAGTCTTTTCACATTTATTGTGCCCATGTGGCTTCAAATATTATATTCACTGTGAAAGATGATAATCCTATTGGGGCAACATTAATTGGAAGAGCATATGTGCCAGTTTCTGAGGTCTTGGATGGTGAAGAAATAGATAAGTGGGTTGAAATCTTGGACACAGAGAAAAACCCAATTGAAGGGGGTTCAAAGATCCATGTGAGGCTGCAATATTTTGATGTATCAAAAGACCGCAACTGGGCTCGAGGAATTAGAAGTCCAAAATACCCTGGAGTTCCCTATACTTTCTTCTCACAGAGGAAAGGATGTAAGGTATTTCTGTACCAAGATGCTCATGTACCTGATAACTTTGTACCTAAAATACCTCTTGCTGGAGGCAAGAATTATGAGGCTCATAGGTGTTGGGAGGATATATTTGATGCGATCACTAATGCAAAACACTTTATATACATTACTGGTTGGTCTGTTTATACTGAAATTTCCTTGGTAAGGGATTCTAGGCGGCCAAAGCCTGGGGGAGACCAAACACTTGGTGAGCTTCTCAAGCAAAAGGCAAGTGAAGGTGTTAGGGTATTGATGCTTGTTTGGGATGATAGAACATCAGTTGGTTTGTTGAAAAAGGATGGATTGATGGCTACTCATGATGAAGAAACCGAGCAGTTTTTCAAGGAAACTGATGTGCACTGTGTTTTATGCCCTCGCAATCCTGATGATGGTGGGAGCATTGTTCAAGATTTACAAATTTCTACCATGTTTACTCATCACCAGAAGATTGTGGTGGTTGACAGCGCTTTGCCTGGTGGAGGAGGGTCAGAGAAGCGAAGAGTTGTGAGTTTTGTTGGGGGTATTGACCTCTGTGATGGAAGATATGACACAGCCTTCCACTCACTTTTCAGAACCCTGGACACAGCACACCATGATGATTTTCATCAGCCTAACTTTACTGGTGCTGCAATCACAAAAGGTGGTCCCAGGGAACCATGGCATGACATTCACTCCCGGCTTGAAGGACCCATAGCTTGGGATGTTTTGTTCAATTTTGAGCAGAGATGGAAAAAGCAAGGTGGGAAGGATATACTTGCTCCACTGAGAGAGCTTGAAGATGTCATTATTCCCCCATCCCCAGTAACGTTTCCTGAAGATCATGAGACCTGGAATGTTCAGTTGTTTAGATCGATTGATGGTGGGGCTGCTTTTGGGTTCCCAGACACTCCTGAAGATGCTGCCAAAGCTGGGCTTGTTAGTGGGAAGGATAACATCATTGATCGTAGCATTCAAGATGCTTATATTCACGCCATTCGACGTGCTAAGAATTTTATCTATATTGAAAATCAATATTTCCTTGGAAGCTCTTTTTCCTGGAGCAATGATGATATTAAGCGTGAAGAGATTGGTGCATTGCATCTAATCCCAAAGGAACTTTCCCTTAAGATTGTTAGTAAGATTGAAGCTGGGGAAAGGTTTGCCGTGTATGTTGTAGTCCCTATGTGGCCAGAGGGTATCCCAGAAAGTGCATCAGTTCAGGCAATATTGGACTGGCAAAAGAGAACAATGGAGATGATGTACAAGGACATTGTTCAGGCACTCAGAGCTAAGGGAAGTGATGAAGATCCCCGAAACTATTTGACATTCTTCTGCCTTGGAAACCGAGAGGTGAAAAAATCAGGAGAATATGAGCCTTCTGAACAACCAGATCCTGATACAGATTATCAGAGAGCTCAAGAAGCCCGGCGTTTCATGATTTATGTTCATACCAAGATGATGATTGTTGACGATGAATACATAATCATTGGATCTGCCAACATCAACCAGAGGTCAATGGATGGGGCTAGGGACTCTGAGATTGCCATGGGTGGTTATCAGCCATATCATTTGGCTACCACACAGCCGGCACGTGGCCAAGTCTACGGTTTCCGCATGTCATTGTGGTATGAGCACCTTGGCATGCTTCATGACTCCTTCCAGAAGCCACAAAGTGAAGAATGCATCAATAAGGTGAACCAGATTGCAGACAAATATTGGGATCTGTATTCTAGTGAGTCACTTGAGCGTGACCTTCCTGGTCACCTTCTACGCTACCCTATTGGTGTTGCCAGTGAAGGAGACGTCACTGAGCTGCCAGGATTTGAATTCTTCCCAGACACCAAGGCTCGCATTCTTGGTGCCAAAGCTGACTACCTCCCTCCTATCCTCACTACCTAG 2544 0.4347 MAQILLHGTLHATIYEVDKLNAGGGGNFFSKVFVLACLDPSESGGLTVDFELLCVGFEIGDVLQIAYKPLKQNIEETVGIGKGVTKLYATIDLEKARVGRTRILENEHSNPKWDESFHIYCAHVASNIIFTVKDDNPIGATLIGRAYVPVSEVLDGEEIDKWVEILDTEKNPIEGGSKIHVRLQYFDVSKDRNWARGIRSPKYPGVPYTFFSQRKGCKVFLYQDAHVPDNFVPKIPLAGGKNYEAHRCWEDIFDAITNAKHFIYITGWSVYTEISLVRDSRRPKPGGDQTLGELLKQKASEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETEQFFKETDVHCVLCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSALPGGGGSEKRRVVSFVGGIDLCDGRYDTAFHSLFRTLDTAHHDDFHQPNFTGAAITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWKKQGGKDILAPLRELEDVIIPPSPVTFPEDHETWNVQLFRSIDGGAAFGFPDTPEDAAKAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFSWSNDDIKREEIGALHLIPKELSLKIVSKIEAGERFAVYVVVPMWPEGIPESASVQAILDWQKRTMEMMYKDIVQALRAKGSDEDPRNYLTFFCLGNREVKKSGEYEPSEQPDPDTDYQRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGGYQPYHLATTQPARGQVYGFRMSLWYEHLGMLHDSFQKPQSEECINKVNQIADKYWDLYSSESLERDLPGHLLRYPIGVASEGDVTELPGFEFFPDTKARILGAKADYLPPILTT 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02783 847 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 364 403 IPR001736 GO:0003824
Vimu11g02783 847 SMART C2_3c 9 162 IPR000008 -
Vimu11g02783 847 Gene3D Endonuclease Chain A 518 736 - -
Vimu11g02783 847 Gene3D C2 domain 68 197 IPR035892 -
Vimu11g02783 847 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 78 188 IPR035892 -
Vimu11g02783 847 PIRSF PLD_plant 1 847 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vimu11g02783 847 SUPERFAMILY Phospholipase D/nuclease 190 483 - -
Vimu11g02783 847 CDD PLDc_pPLDalpha_2 531 740 - -
Vimu11g02783 847 CDD C2_plant_PLD 2 186 - -
Vimu11g02783 847 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 693 720 IPR001736 GO:0003824
Vimu11g02783 847 PANTHER PHOSPHOLIPASE D 4 835 IPR015679 -
Vimu11g02783 847 Pfam C2 domain 82 165 IPR000008 -
Vimu11g02783 847 ProSiteProfiles C2 domain profile. 1 163 IPR000008 -
Vimu11g02783 847 FunFam Phospholipase D delta 239 483 - -
Vimu11g02783 847 FunFam Phospholipase D 506 739 - -
Vimu11g02783 847 Pfam Phospholipase D Active site motif 364 403 IPR001736 GO:0003824
Vimu11g02783 847 Pfam Phospholipase D Active site motif 694 720 IPR001736 GO:0003824
Vimu11g02783 847 SUPERFAMILY Phospholipase D/nuclease 493 777 - -
Vimu11g02783 847 Gene3D Endonuclease Chain A 237 479 - -
Vimu11g02783 847 SMART pld_4 693 720 IPR001736 GO:0003824
Vimu11g02783 847 SMART pld_4 364 403 IPR001736 GO:0003824
Vimu11g02783 847 Pfam Phospholipase D C terminal 766 837 IPR024632 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02783 Vimu-Chr11 48018629 48022128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02783 1 847 Phospholipase D Gene Family (Wang group) AT3G15730 79.103 0.0 1411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02783 K01115 - gmx:100786410 1543.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02783 11 48018629 48022128 Vimu4g00144 4 923146 923468 ECH
Vimu10g02958 10 40560920 40564362 Vimu11g02783 11 48018629 48022128 ECH
Vimu11g02783 11 48018629 48022128 Vimu11g02783 11 48018629 48022128 ECH
Vimu4g00144 4 923146 923468 Vimu11g02783 11 48018629 48022128 PCT